BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0067.p (292 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1797 [G] COG0395 ABC-type sugar transport system, permease com... 229 3e-60 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 229 5e-60 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 226 2e-59 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 223 2e-58 BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 199 5e-51 >SP1797 [G] COG0395 ABC-type sugar transport system, permease component Length = 305 Score = 229 bits (585), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 120/297 (40%), Positives = 198/297 (66%), Gaps = 7/297 (2%) Query: 2 IKTSLGERIFD----ICNVIVMVLMIILTLYPMLYILFSSLSEGNRLISFDGILLWPQGF 57 +K S+ + FD + N I++V ++++TL P+LYI+ +S + L+S GI P + Sbjct: 10 MKNSIMDTKFDRRILLLNKIIIVFIVLMTLLPLLYIVVASFMDPKVLVS-RGISFNPADW 68 Query: 58 SLEGYKAVLNNPVILSGFKNTFFILVVGLGINMTLTSLGAYFLSRDGVLLQKPIMFFIVF 117 ++EGY+ V ++ IL GF N+ + + L+ AY LS+ ++ ++ I +F++ Sbjct: 69 TVEGYQRVFSDQSILRGFINSLLYSFGFAALTVLLSVFTAYPLSKKDLVGRRWINYFLIV 128 Query: 118 TMFFQGGLVPFYLIVKSYGLLDSLWALILPTAVSTFNLIIMRTYFMAIPKELEESAFLDG 177 TMFF GGLVP YL+VK G+L++ WA+I+P AV+ +N+I+ R YF +P+EL E+A +DG Sbjct: 129 TMFFGGGLVPTYLLVKELGMLNTPWAIIVPGAVNVWNIILARAYFQGLPEELVEAAVIDG 188 Query: 178 AGHFTILFRIFLPLSMPVVAVLILYYGVGHWNSWFNAMIFLRDQDLFPIQLVVRNIILEN 237 A I F+I LPL+ P++ VL LY VG WNS+F+AMI+++D +L P+QLV+R I++++ Sbjct: 189 ANDLQIFFKIMLPLAKPIMFVLFLYAFVGQWNSYFDAMIYIKDPNLEPLQLVLRKILIQS 248 Query: 238 D-NASMLGTTTLIQS-RDVAETLKYAAIIVTTAPILLLYPFLQKYFVKGVMVGALKG 292 M+G + + +AE +KYA I++++ P++++YPF QKYF KG+M G+LKG Sbjct: 249 QPGQDMIGAQAAMNEMKRLAELIKYATIVISSLPLIVMYPFFQKYFDKGIMAGSLKG 305 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 229 bits (583), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 117/291 (40%), Positives = 190/291 (65%), Gaps = 6/291 (2%) Query: 5 SLGERIFDICNVIVMVLMIILTLYPMLYILFSSLSEGNRLISFDGILLWPQGFSLEGYKA 64 SLG R+F+I N + + L ++ P ++I+ S + ++ +L+P FSL+ Y+ Sbjct: 6 SLGSRVFNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQ-KRFILFPTTFSLDAYRY 64 Query: 65 VLNNPVILSGFKNTFFILVVGLGINMTLTSLGAYFLSRDGVLLQKPIMFFIVFTMFFQGG 124 + + +I + + VVG G +M LTSL AY LSR + ++ +MF +VFTM F GG Sbjct: 65 IFSTDIIFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLFSGG 124 Query: 125 LVPFYLIVKSYGLLDSLWALILPTAVSTFNLIIMRTYFMAIPKELEESAFLDGAGHFTIL 184 ++P +L+V+S GLLD+ WALI+PTA++ FNLII++ +F IP+ LEESA +DG I Sbjct: 125 MIPTFLVVRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCNDVGIF 184 Query: 185 FRIFLPLSMPVVAVLILYYGVGHWNSWFNAMIFLRDQDLFPIQLVVRNIILENDNASMLG 244 FRI PLSMP +A + L+Y V +WN++ A+++L D ++PIQ+++R I++ ++ M G Sbjct: 185 FRIVFPLSMPAIATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLLRQIVIM--SSGMQG 242 Query: 245 TTTLIQSRDV---AETLKYAAIIVTTAPILLLYPFLQKYFVKGVMVGALKG 292 T + + V +T+K A I+V T P+L++YPF+QK+F KG ++G++KG Sbjct: 243 DLTELGAGFVMPPEQTIKMAVIVVATIPVLIVYPFIQKHFAKGALLGSVKG 293 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 226 bits (577), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 114/291 (39%), Positives = 191/291 (65%), Gaps = 9/291 (3%) Query: 6 LGERIFDICNVIVMVLMIILTLYPMLYILFSSLSEGNRLISFDGILLWPQGFSLEGYKAV 65 + R+FD+ +++ ++ + P ++++ +S + ++S IL+ P FSL+ Y+ + Sbjct: 1 MKNRLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILI-PTTFSLDAYRYI 59 Query: 66 LNNPVILSGFKNTFFILVVGLGINMTLTSLGAYFLSRDGVLLQKPIMFFIVFTMFFQGGL 125 + +I + F+ V+G ++M L+SL AY LSR ++ ++P+MF +VFTM F GG+ Sbjct: 60 FSTDIIYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGM 119 Query: 126 VPFYLIVKSYGLLDSLWALILPTAVSTFNLIIMRTYFMAIPKELEESAFLDGAGHFTILF 185 +P +L+VKS GLLDS WALILPTA++ FNLII++ +F IP LEESA +DG I F Sbjct: 120 IPTFLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFF 179 Query: 186 RIFLPLSMPVVAVLILYYGVGHWNSWFNAMIFLRDQDLFPIQLVVRNIILEND----NAS 241 +I LPLS+P +A + L+Y V +WN++ A+++L D +PIQ+++R I++ + + S Sbjct: 180 KIVLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIVIVSSGMQGDMS 239 Query: 242 MLGTTTLIQSRDVAETLKYAAIIVTTAPILLLYPFLQKYFVKGVMVGALKG 292 +G+ S +T+K A I+V T P+LL+YPF+QK+F KG ++G++KG Sbjct: 240 EMGS----GSPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVKG 286 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 223 bits (568), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 114/292 (39%), Positives = 184/292 (63%), Gaps = 3/292 (1%) Query: 1 MIKTSLGERIFDICNVIVMVLMIILTLYPMLYILFSSLSEGNRLISFDGILLWPQGFSLE 60 M T G R+FD+CN++ + + +T+ P LYI+ S + L ++P+ F+L+ Sbjct: 7 MHNTKAG-RVFDVCNILFLGGVGAITILPFLYIIAGSFATEAELAQ-RSFFIFPKTFTLD 64 Query: 61 GYKAVLNNPVILSGFKNTFFILVVGLGINMTLTSLGAYFLSRDGVLLQKPIMFFIVFTMF 120 YK V + P L + FI VVG + + T AY L++ V + ++ ++F+M Sbjct: 65 AYKYVFSTPTFLRSMGVSIFITVVGTAVQLFFTFTMAYPLAKRHVKGRNLLLNLVIFSML 124 Query: 121 FQGGLVPFYLIVKSYGLLDSLWALILPTAVSTFNLIIMRTYFMAIPKELEESAFLDGAGH 180 F GG++P YL+VKS GLLD+ WALILP A++ FNLII++ +F +P+ELEESA +DG Sbjct: 125 FSGGMIPTYLVVKSLGLLDTYWALILPMAINPFNLIIIKNFFQQLPRELEESAKIDGCSE 184 Query: 181 FTILFRIFLPLSMPVVAVLILYYGVGHWNSWFNAMIFLRDQDLFPIQLVVRNIILENDNA 240 + +RI LPLS PV+A L+Y VG WN +F+A++++ D +P+Q+V+R + + +D Sbjct: 185 IGVFWRIALPLSKPVIATFALFYAVGIWNDFFHALLYINDSAKWPLQMVLRQVTILSDLT 244 Query: 241 SMLGTTTLIQSRDVAETLKYAAIIVTTAPILLLYPFLQKYFVKGVMVGALKG 292 + G T+ + + +K A I++ T PIL +YPFLQK+F KG+++G++KG Sbjct: 245 ATNG-DTMQNAVPPEQGIKLAVIVIATLPILAVYPFLQKHFAKGMLIGSVKG 295 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 199 bits (505), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 108/289 (37%), Positives = 181/289 (62%), Gaps = 8/289 (2%) Query: 7 GERIFDICNVIVMVLMIILTLYPMLYILFSSLSEGNRLISFDGILLWPQGFSLEGYKAVL 66 G ++F N ++L +L + P+++I SLS G+ + + ++ P F+L+ Y+ + Sbjct: 8 GYKVFTAFNYTFLLLFAVLCILPLVHIFAVSLS-GSGAAAANLVMFLPVDFTLDAYERTI 66 Query: 67 NNPVILSGFKNTFFILVVGLGINMTLTSLGAYFLSRDGVLLQ--KPIMFFIVFTMFFQGG 124 N + F + +V+G I+M AY LS++ + K ++F V TM F GG Sbjct: 67 ANDNFIRSFLISVVRVVLGTVISMGAMLCAAYALSKEDRDFKGRKFYIWFFVITMLFNGG 126 Query: 125 LVPFYLIVKSYGLLDSLWALILPTAVSTFNLIIMRTYF-MAIPKELEESAFLDGAGHFTI 183 LVP Y++V GL +++WAL+LP A++ FNLI++ +F A+PK LEESAF+DGA HF I Sbjct: 127 LVPTYMVVTGLGLTNTIWALVLPPAINAFNLILLLNFFRTAVPKSLEESAFIDGANHFQI 186 Query: 184 LFRIFLPLSMPVVAVLILYYGVGHWNSWFNAMIFLRDQDLFPIQLVVRNIILENDNASML 243 +I+LP+S+P +A + L+ V HWNSWF+ MI+ D +P+Q ++ I+++ D + + Sbjct: 187 FLKIYLPISVPAIATVSLFTMVFHWNSWFDGMIYNNDARNYPLQTFLQTIVVQQDFSQIT 246 Query: 244 GTTTLIQSRDVAE-TLKYAAIIVTTAPILLLYPFLQKYFVKGVMVGALK 291 TL R++++ T++ A I + P+L++YPF+QKYFVKG+++GA K Sbjct: 247 DAETL---RNLSQRTVQAAQIFIAALPMLIVYPFIQKYFVKGIVLGAEK 292 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.147 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,306,026 Number of extensions: 824611 Number of successful extensions: 4128 Number of sequences better than 1.0e-05: 146 Number of HSP's gapped: 3931 Number of HSP's successfully gapped: 146 Length of query: 292 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 187 Effective length of database: 26,268,361 Effective search space: 4912183507 Effective search space used: 4912183507 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)