BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0052.p (285 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_araQ [G] COG0395 ABC-type sugar transport system, permease co... 309 3e-84 BH0903 [G] COG0395 ABC-type sugar transport system, permease com... 297 1e-80 lin1843 [G] COG0395 ABC-type sugar transport system, permease co... 154 1e-37 TM0598 [G] COG0395 ABC-type sugar transport system, permease com... 149 4e-36 STM0598 [IQR] COG1028 Dehydrogenases with different specificitie... 149 4e-36 >BS_araQ [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 309 bits (792), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 143/254 (56%), Positives = 195/254 (76%), Gaps = 3/254 (1%) Query: 32 YALFLASLKPATELFRYGLNVRLDFNLMSLDNYKSIFSGLGAAGNYFGWYKNXXXXXXXX 91 + L L SLKP++EL R GLN+ +D +MS DNY +F+G YF W+ N Sbjct: 31 FCLLLGSLKPSSELLRVGLNLDIDPKVMSFDNYTFLFNG---GSIYFKWFFNSLVLGLFT 87 Query: 92 XXXXXXXXXMVGYGLGMYRFRGRNLIFTLVLVVMMIPVEIILLPLYKLMISLKLINTIWG 151 M+GYGL +Y F+GRN+IF LVL++MM+P+E+++LPL+KL + L LI++ G Sbjct: 88 TVLTLFFSSMIGYGLAVYDFKGRNIIFVLVLIIMMVPLEVMMLPLFKLTVGLHLIDSYTG 147 Query: 152 VILPFIVAPLPIFFFRQFALGLPKDFMDAGRIDGCSEYGIFFKIMVPLMAPAFGAITILQ 211 VILP I +P+ +FFFRQ+ALGLP+D +D+ R+DGC+E+GIFF+IM PLM PAFGA+ ILQ Sbjct: 148 VILPLIASPVAVFFFRQYALGLPRDLLDSARMDGCTEFGIFFRIMAPLMKPAFGAMIILQ 207 Query: 212 AMNSWNNFLWPLIVLRTTEQFTLPIGLASFVSPLGNNYEALIAGAVLAILPILVLFLFFQ 271 ++NSWNNFLWPLIVLR+ E FTLPIGL+S +SP GNNY+ LI+G+V AILP++++FLFFQ Sbjct: 208 SLNSWNNFLWPLIVLRSKEMFTLPIGLSSLLSPYGNNYDMLISGSVFAILPVIIIFLFFQ 267 Query: 272 RFFMEGLTVGGIKG 285 ++F+ GLTVGG+KG Sbjct: 268 KYFISGLTVGGVKG 281 >BH0903 [G] COG0395 ABC-type sugar transport system, permease component Length = 279 Score = 297 bits (760), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 142/252 (56%), Positives = 190/252 (75%), Gaps = 3/252 (1%) Query: 34 LFLASLKPATELFRYGLNVRLDFNLMSLDNYKSIFSGLGAAGNYFGWYKNXXXXXXXXXX 93 L LAS +P+TEL R G+ + D + ++LDN+ IF+ AG Y+ W+ N Sbjct: 31 LILASFRPSTELMRNGITLIFDPSTLTLDNFIYIFT---EAGLYWTWFGNSVWISIVIVV 87 Query: 94 XXXXXXXMVGYGLGMYRFRGRNLIFTLVLVVMMIPVEIILLPLYKLMISLKLINTIWGVI 153 MVGY L +Y F+GRN F LVL+++MIP EI++LPL++LMI L+L+NT VI Sbjct: 88 LSLLFSSMVGYALAVYDFKGRNFFFLLVLIILMIPFEILMLPLFQLMIKLQLVNTYTAVI 147 Query: 154 LPFIVAPLPIFFFRQFALGLPKDFMDAGRIDGCSEYGIFFKIMVPLMAPAFGAITILQAM 213 LP IVAP+ +FFFRQ+ALGLPK+ MDA RIDGC+EYGIFFKIM+PLM P+ A+ ILQ + Sbjct: 148 LPAIVAPIAVFFFRQYALGLPKELMDAARIDGCTEYGIFFKIMLPLMGPSLAAMAILQGL 207 Query: 214 NSWNNFLWPLIVLRTTEQFTLPIGLASFVSPLGNNYEALIAGAVLAILPILVLFLFFQRF 273 NSWNNFLWPL+VLR+ + FTLPIGLA+ ++P GNNY+ L+AG+V+ I+PI++LF+FFQR+ Sbjct: 208 NSWNNFLWPLVVLRSNDMFTLPIGLATLLTPYGNNYDILLAGSVMTIVPIVILFIFFQRY 267 Query: 274 FMEGLTVGGIKG 285 F+ GLTVGG+KG Sbjct: 268 FIAGLTVGGVKG 279 >lin1843 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 138/249 (55%), Gaps = 7/249 (2%) Query: 36 LASLKPATELFRYGLNVRLDFNLMSLDNYKSIFSGLGAAGNYFGWYKNXXXXXXXXXXXX 95 L+SLK E+ + + + +LDN+ +F+ + F Y Sbjct: 35 LSSLKTDAEILKIPPTIWPE--TFTLDNFTKLFTEMD-----FAIYLKNTLIIVFFSFFG 87 Query: 96 XXXXXMVGYGLGMYRFRGRNLIFTLVLVVMMIPVEIILLPLYKLMISLKLINTIWGVILP 155 M GYG ++F+G+N +F LVL MMIP ++ ++P+Y L+ + L NT+ G++LP Sbjct: 88 LFLNAMAGYGFAKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTMTGIVLP 147 Query: 156 FIVAPLPIFFFRQFALGLPKDFMDAGRIDGCSEYGIFFKIMVPLMAPAFGAITILQAMNS 215 +V IF FRQF + D ++A R+DG SE+ IF++I++P+ P IL + Sbjct: 148 GLVGAFGIFLFRQFMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGILTFIAG 207 Query: 216 WNNFLWPLIVLRTTEQFTLPIGLASFVSPLGNNYEALIAGAVLAILPILVLFLFFQRFFM 275 WN+FLWPLI+ + +TL +GL G+NY +AGA ++PI+++F+ FQ++ + Sbjct: 208 WNSFLWPLIIANDEKFYTLSVGLQLLKGQYGSNYALQMAGATFMVIPIILIFMTFQKYIL 267 Query: 276 EGLTVGGIK 284 +G V G+K Sbjct: 268 KGFNVSGMK 276 >TM0598 [G] COG0395 ABC-type sugar transport system, permease component Length = 277 Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 73/184 (39%), Positives = 115/184 (62%) Query: 101 MVGYGLGMYRFRGRNLIFTLVLVVMMIPVEIILLPLYKLMISLKLINTIWGVILPFIVAP 160 + Y F GR+ IF L L MMIP E++L+P + + L I+T + +I+P+IV+ Sbjct: 94 LAAYAFSWMVFPGRDFIFGLFLATMMIPGEVLLVPNFITISKLGWIDTYYALIIPWIVSV 153 Query: 161 LPIFFFRQFALGLPKDFMDAGRIDGCSEYGIFFKIMVPLMAPAFGAITILQAMNSWNNFL 220 IF RQ L +P++ DA +IDGCS + ++++VPL PA +L+ + SWN FL Sbjct: 154 FAIFLLRQHFLTIPRELFDAAKIDGCSHWRFLWQMVVPLSKPAVITSALLKFVGSWNAFL 213 Query: 221 WPLIVLRTTEQFTLPIGLASFVSPLGNNYEALIAGAVLAILPILVLFLFFQRFFMEGLTV 280 W LIV + + TLP+GL +F S +G Y L+A A +ILP+++LF+F Q++F++G+ Sbjct: 214 WVLIVTNSEKYRTLPVGLQAFSSDVGTQYNLLMAAATFSILPVVILFIFTQKYFIQGIAR 273 Query: 281 GGIK 284 G+K Sbjct: 274 TGLK 277 >STM0598 [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Length = 251 Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 0/184 (0%), Positives = 0/184 (0%) Query: 101 MVGYGLGMYRFRGRNLIFTLVLVVMMIPVEIILLPLYKLMISLKLINTIWGVILPFIVAP 160 + F L M + + I A Sbjct: 94 LSVDDWQQTFAVNVGGAFNLFSQTMAQFRRQQGGAIVTVASDAAHTPRIGMSAYGASKAA 153 Query: 161 LPIFFFRQFALGLPKDFMDAGRIDGCSEYGIFFKIMVPLMAPAFGAITILQAMNSWNNFL 220 L G ++ + + V A + Sbjct: 154 LKSLALTVGLELAGCGVRCNVVSPGSTDTDMQRTLWVSEDAEQQRIRGFGEQFKLGIPLG 213 Query: 221 WPLIVLRTTEQFTLPIGLASFVSPLGNNYEALIAGAVLAILPILVLFLFFQRFFMEGLTV 280 Sbjct: 214 273 Query: 281 GGIK 284 Sbjct: 274 277 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.332 0.148 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,937,289 Number of extensions: 656251 Number of successful extensions: 2283 Number of sequences better than 1.0e-05: 159 Number of HSP's gapped: 2102 Number of HSP's successfully gapped: 159 Length of query: 285 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 180 Effective length of database: 26,268,361 Effective search space: 4728304980 Effective search space used: 4728304980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)