BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0346.0051.p
         (654 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGpA121 [S] COG3533 Uncharacterized protein conserved in bacteria     433   e-121

>AGpA121 [S] COG3533 Uncharacterized protein conserved in bacteria
          Length = 435

 Score =  433 bits (1113), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 0/476 (0%), Positives = 0/476 (0%), Gaps = 18/476 (3%)

Query: 70  VFQDSDVGKWLEAVAYLLETKRDSALEEIADGVIELLALAQREDGYLNTYFMLKEPGREW 129
                             E +         +  +  LA       +  +    +      
Sbjct: 83  EVSKLTSIPDSTLKLMSSEGRGPVPGRLENNHRVYTLAQINELREFFASQKPSEALRFLP 142

Query: 130 TNLAECHELYCAGHLIEAATAYYRATGKRKLLDAASRYADYIADVFGTEPGKLQGYDGHQ 189
                 H    A    +  +A            A   Y     D+              +
Sbjct: 143 RRREGEHLQVVAIANFKGGSAKTTTCVHLAHYLALQGYRVLALDLDPQASLSALFGAQPE 202

Query: 190 EIELALVKLFHATGEEKYLQLSRYFLEQRGSQP---HYFEQEWEKRGRTLHFPQLSMVHD 246
               A   ++ A   +   +     + ++                           ++  
Sbjct: 203 FDVGANETIYAALRYDDAERRPIRDIIRKTYFDGIDLIPGNLEVMEYEH---ETPRVLAQ 259

Query: 247 HPYSQSHLPVREQTTAEGHAVRLVYMCTAMADIALETKDAGLLEACRKLWDNIVNKRMYI 306
              S +    R +            +             + +  A   +           
Sbjct: 260 KSGSGAIFFERLKLALSEVEQDYDIVILDTPPSLGFLTLSAIYAATSMIITVHPAMLDVA 319

Query: 307 TGGIGSMEQGEAFTADYDLPPDLAYAETCASVGLIFFARRMLELEHNSKYADVMERALYN 366
           +     +  G+  +   +    L        V                         L  
Sbjct: 320 SMSQFLLMMGDLISVLNESGAQLDQDFIRYLVTRHDPNDAPQSQVVAMMRHLFGSDVLLP 379

Query: 367 TVISGMSLDGTKFFYVNPLEVYPEVLGKNKNYNHVKAERQGWFTCACCPPNVARLVASLG 426
           T+I   +++       +  E              +    +     A    +         
Sbjct: 380 TLIESTAVEAAGLAKRSIYE------------LEMGQIGRDTHKRAREAVDAVNEAILKL 427

Query: 427 DYIYTVQGDTLYVELYIGGRMETVVQGIPAVVEQFSNYTSDGTVRLVVTPEQAGEFTVAL 486
                                                                       
Sbjct: 428                                                              487

Query: 487 RMPDWCDEARVALNRETGVRHGGNEDGYIRLTRSWVPGDTIELSFSMPVKRMKGHP 542
                                                                   
Sbjct: 488                                                          543


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 51,120,383
Number of extensions: 2145157
Number of successful extensions: 5562
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5558
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 38,378,431
Length adjustment: 113
Effective length of query: 541
Effective length of database: 25,345,689
Effective search space: 13712017749
Effective search space used: 13712017749
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 119 (50.4 bits)