BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0045.p (277 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0219 [G] COG0395 ABC-type sugar transport system, permease co... 216 2e-56 BH1119 [G] COG0395 ABC-type sugar transport system, permease com... 196 4e-50 all4824 [G] COG0395 ABC-type sugar transport system, permease co... 187 1e-47 lin1843 [G] COG0395 ABC-type sugar transport system, permease co... 187 1e-47 ML1425 [G] COG0395 ABC-type sugar transport system, permease com... 186 5e-47 >lin0219 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 112/270 (41%), Positives = 162/270 (60%), Gaps = 2/270 (0%) Query: 7 ISKAIIYLLLAAGSFFCLFPIFWMVRTSLIDMGELYQIPPGLIPKVLNWDNFRTALDAYP 66 I + Y ++ G L P WM+ T+ +PP IPK NF + +P Sbjct: 14 IKNILTYTIICLGGIIMLMPFVWMISTAFKTGAANMVLPPQFIPKEPTTANFTQVFEMFP 73 Query: 67 FGRFFMNSVIITSLAILGVLLSSSLCAYSFSRIDWKGRDKVFGVILTGLMIPFFVVMIPQ 126 RF MNSV++ + LG +L S+ AY+F+RI + GRDK+F + L +M+P V MIPQ Sbjct: 74 MLRFLMNSVVVAVVTTLGQMLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQ 133 Query: 127 YVFWNALHLTDTFVPLVAPAWFGGGVFNIFLLRQFFLGIPRELDEAAKVDGAGHLRIYAV 186 ++ D++ L+ PA F VF FLLRQ F+GIP+EL+EAA +DGA H I+ Sbjct: 134 FILMKQFGWLDSYAGLIVPALFS--VFGTFLLRQAFMGIPKELEEAAFMDGANHFTIFRK 191 Query: 187 IIVPLAKQAMIVIGLLTFLANWNDYLGPLAFITSEKNYTLMQGLTLFQGSYSAQWNLMMA 246 +I+PLAK +G+LTF+ +WN YL PL +S++ TL GL+L QG Y + LMMA Sbjct: 192 VILPLAKPTFATLGILTFMQSWNSYLWPLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMA 251 Query: 247 ATTVIVIPSLVIFLIAQRHFIEGIAMTGIK 276 + VIP L ++L AQ++FI+G+AM+G+K Sbjct: 252 GVLISVIPILAVYLFAQKYFIQGMAMSGMK 281 >BH1119 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 196 bits (498), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 104/283 (36%), Positives = 164/283 (57%), Gaps = 14/283 (4%) Query: 3 QQSWISKAIIYLLLAAGSFFCLFPIFWMVRTSLIDMGELYQIPPGLIPKVLNWDNF---- 58 +++W + I Y + A F ++PI WMV +SL E++ LIP W N+ Sbjct: 4 KRTWYADVIYYGFVIAFGFIMVYPILWMVASSLKPASEIFSQASSLIPSEFVWSNYPDGW 63 Query: 59 ----RTALDAYPFGRFFMNSVIITSLAILGVLLSSSLCAYSFSRIDWKGRDKVFGVILTG 114 RT D Y F NS IIT+ ++G +LSSS+ AY F+R+ +K + +F ++ Sbjct: 64 AGFGRTGFDIY-----FKNSFIITTSVVIGAILSSSIVAYGFARLQFKFKKVLFACLIAT 118 Query: 115 LMIPFFVVMIPQYVFWNALHLTDTFVPLVAPAWFGGGVFNIFLLRQFFLGIPRELDEAAK 174 +M+P + +IPQY+ ++ L +TF PL+ PA+ GG F IFLL QF GIPRELDEAA Sbjct: 119 VMLPVQITLIPQYILFHNLGWVNTFYPLIVPAFLGGTPFFIFLLIQFIRGIPRELDEAAI 178 Query: 175 VDGAGHLRIYAVIIVPLAKQAMIVIGLLTFLANWNDYLGPLAFITSEKNYTLMQGLTLFQ 234 +DG ++ +I+PL K A++ + + F+ W+D+L PL ++ T+ GL F Sbjct: 179 IDGCSTFGVFWRVILPLLKPALVTVAIFAFMWTWDDFLAPLIYLNKTDIQTVALGLRNFM 238 Query: 235 GSYSA-QWNLMMAATTVIVIPSLVIFLIAQRHFIEGIAMTGIK 276 + S W ++A +T+ ++P +IFL QR+ +EGI+ TG+K Sbjct: 239 DAESGTSWGALLAMSTLSLLPQFIIFLFFQRYLVEGISTTGLK 281 >all4824 [G] COG0395 ABC-type sugar transport system, permease component Length = 279 Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 100/277 (36%), Positives = 166/277 (59%), Gaps = 3/277 (1%) Query: 2 KQQSWISKAIIYLLLAAGSFFCLFPIFWMVRTSLIDMGE-LYQIPPGLIPKVLNWDNFRT 60 Q S ++Y LL +F LFP+ W++ T+L E ++Q PP L+P DNF Sbjct: 5 TQNSPWRTLVMYGLLGVIAFITLFPLLWLISTALKSPTENIFQSPPQLLPNQPTVDNFFK 64 Query: 61 ALDAYPFGRFFMNSVIITSLAILGVLLSSSLCAYSFSRIDWKGRDKVFGVILTGLMIPFF 120 ++ PFG++ NS +++ L + LL SL AY +R+ + GRD +F I++ +MIPF Sbjct: 65 VWNSLPFGQYLYNSTLVSVLTVGLNLLFCSLAAYPLARLSFPGRDWIFIAIVSTIMIPFQ 124 Query: 121 VVMIPQYVFWNALHLTDTFVPLVAPAWFGGGVFNIFLLRQFFLGIPRELDEAAKVDGAGH 180 +VMIP Y+ L L +T++ ++ P+ F IFLLRQ F+G+P+E++EAA++DG+ Sbjct: 125 IVMIPLYILTVQLGLRNTYLGMMFPSL--ASAFGIFLLRQAFMGVPKEIEEAARMDGSSE 182 Query: 181 LRIYAVIIVPLAKQAMIVIGLLTFLANWNDYLGPLAFITSEKNYTLMQGLTLFQGSYSAQ 240 L ++ I++P + A++ + + F+ W+D+L PL I E YTL G+ G++S Sbjct: 183 LGLWWHIMLPAVRPALVTLAIFVFIGAWSDFLWPLIVIQDENLYTLPLGVAKLAGTFSLD 242 Query: 241 WNLMMAATTVIVIPSLVIFLIAQRHFIEGIAMTGIKG 277 W L+ A + + + P L++FLI QR+ +E +G+KG Sbjct: 243 WRLVAAGSVIAIAPVLLLFLILQRYIVETDIGSGVKG 279 >lin1843 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 101/275 (36%), Positives = 160/275 (58%), Gaps = 3/275 (1%) Query: 2 KQQSWISKAIIYLLLAAGSFFCLFPIFWMVRTSLIDMGELYQIPPGLIPKVLNWDNFRTA 61 +Q+S ++ + +L G FF + P WMV +SL E+ +IPP + P+ DNF Sbjct: 5 RQKSRGAQIAVITILTVGGFFMILPFIWMVLSSLKTDAEILKIPPTIWPETFTLDNFTKL 64 Query: 62 LDAYPFGRFFMNSVIITSLAILGVLLSSSLCAYSFSRIDWKGRDKVFGVILTGLMIPFFV 121 F + N++II + G+ L++ + Y F++ +KG++K+F ++L +MIP V Sbjct: 65 FTEMDFAIYLKNTLIIVFFSFFGLFLNA-MAGYGFAKFKFKGKNKLFYLVLATMMIPGQV 123 Query: 122 VMIPQYVFWNALHLTDTFVPLVAPAWFGGGVFNIFLLRQFFLGIPRELDEAAKVDGAGHL 181 MIP Y+ NA LT+T +V P G F IFL RQF I +L EAA++DGA Sbjct: 124 TMIPVYLLLNAAGLTNTMTGIVLPGLVGA--FGIFLFRQFMSTISDDLLEAARLDGASEF 181 Query: 182 RIYAVIIVPLAKQAMIVIGLLTFLANWNDYLGPLAFITSEKNYTLMQGLTLFQGSYSAQW 241 I+ I++P+++ + V G+LTF+A WN +L PL EK YTL GL L +G Y + + Sbjct: 182 YIFWRIVIPISRPVLAVQGILTFIAGWNSFLWPLIIANDEKFYTLSVGLQLLKGQYGSNY 241 Query: 242 NLMMAATTVIVIPSLVIFLIAQRHFIEGIAMTGIK 276 L MA T +VIP ++IF+ Q++ ++G ++G+K Sbjct: 242 ALQMAGATFMVIPIILIFMTFQKYILKGFNVSGMK 276 >ML1425 [G] COG0395 ABC-type sugar transport system, permease component Length = 283 Score = 186 bits (471), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 100/275 (36%), Positives = 158/275 (57%), Gaps = 3/275 (1%) Query: 3 QQSWISKAIIYLLLAAGSFFCLFPIFWMVRTSLIDMGELYQIPPGLIPKVLNWDNFRTAL 62 ++S + ++Y+ L ++ LFPI W + SL GE+ + P L+P W N+ Sbjct: 12 KRSVLRAVVVYIALTGIAWCALFPIVWALSGSLKKEGEIRE--PTLLPAHPQWSNYTEVF 69 Query: 63 DAYPFGRFFMNSVIITSLAILGVLLSSSLCAYSFSRIDWKGRDKVFGVILTGLMIPFFVV 122 D PF R F N+V+ +G + SL Y+F+R+ ++GRD +F + L LM+P V Sbjct: 70 DLIPFWRMFFNTVLYAGYVTVGQVFFCSLAGYAFARLQFRGRDALFVLYLGTLMMPLTVT 129 Query: 123 MIPQYVFWNALHLTDTFVPLVAPAWFGGGVFNIFLLRQFFLGIPRELDEAAKVDGAGHLR 182 +IPQ++ L TDT ++ P FG F +L+RQFF +P +L+EAA +DG + Sbjct: 130 IIPQFILMRVLGWTDTPWAMIVPGLFGSA-FGTYLMRQFFRTLPSDLEEAAILDGCSPWQ 188 Query: 183 IYAVIIVPLAKQAMIVIGLLTFLANWNDYLGPLAFITSEKNYTLMQGLTLFQGSYSAQWN 242 IY +++P AK A+ V+ +LT++ WND+L PL I TL GL +G Y W Sbjct: 189 IYWRVLLPHAKPAVGVLAVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRMRGEYGTCWP 248 Query: 243 LMMAATTVIVIPSLVIFLIAQRHFIEGIAMTGIKG 277 ++MA + +I++P ++I+ IAQR F+ GI +T I G Sbjct: 249 VIMATSMLIILPLVIIYTIAQRAFVRGITVTRIGG 283 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.145 0.461 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,083,538 Number of extensions: 819066 Number of successful extensions: 9389 Number of sequences better than 1.0e-05: 155 Number of HSP's gapped: 9150 Number of HSP's successfully gapped: 155 Length of query: 277 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 172 Effective length of database: 26,268,361 Effective search space: 4518158092 Effective search space used: 4518158092 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)