BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0038.p (334 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 204 2e-52 BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 200 2e-51 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 188 9e-48 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 188 1e-47 SP1798 [G] COG4209 ABC-type polysaccharide transport system, per... 177 3e-44 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 116/320 (36%), Positives = 181/320 (56%), Gaps = 6/320 (1%) Query: 16 PSPALQQMGKRPIGQR--IKEWVTDFRRQWEIQSMVIPGIIFMIVFCYIPIYGLTIAFKN 73 P+P ++Q K P G+ IK + Q + M +P +I++I+F Y+P+YG +IAF++ Sbjct: 18 PAP-IKQPPKTPAGKPTGIKLFFKKCYEQKALLLMSLPFLIWLIIFRYVPLYGWSIAFQD 76 Query: 74 YTVIDTLSSAPWVGLDNFKIILSDKYFWDSVINTLGISFLKLAIGFVIPIILGIMIYELN 133 + + W G +F + +D F++ + NTL +S + L +GFV I L I++ EL Sbjct: 77 FRPARPIFDQDWAGFKHFTFLFTDPRFFEVLRNTLAMSLINLVLGFVTAIGLAILLNELR 136 Query: 134 RGRFKKIVQTISYLPHFLSWIVLGGMLITWFS-TSGXXXXXXXXXXXISKPSNILLDAGK 192 FK++VQTISY+PHFLSW+V G++ S +G IS+P + L G+ Sbjct: 137 NLTFKRVVQTISYMPHFLSWVVAAGLVSAALSIENGIINIVLMKLGMISEPI-MWLGVGE 195 Query: 193 YWW-IATLSDIWKEAGWGTILYLAVMSKIDPTYYEAARIDGASRIRQIWNITLPNMKTII 251 Y+W I SD+WK GW TI+YLA ++ ID YEAA IDGA+R+++IW ITLP M+ +I Sbjct: 196 YFWGIIGASDVWKNVGWNTIIYLAAITMIDTEQYEAAEIDGATRLQRIWYITLPGMRPVI 255 Query: 252 SLNLILTVSGLLGSNLDQTLVLMNSQNREKAEVINSYVYRMGMTQGDFSYATXXXXXXXX 311 + LI+ + +L S + +LMN N + AE ++ +V R G+ G+FS AT Sbjct: 256 VILLIMNLGYILESGFEAQYLLMNPMNMDFAENLDIFVLRYGINMGNFSLATAAGIFKTV 315 Query: 312 XXXXXXXXXNKITSKLNDNQ 331 N I +L + + Sbjct: 316 VSFIFLFSANHIAKRLGEAR 335 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 107/306 (34%), Positives = 172/306 (56%), Gaps = 2/306 (0%) Query: 30 QRIKEWVTDFRRQWEIQSMVIPGIIFMIVFCYIPIYGLTIAFKNYTVIDTLSSAPWVGLD 89 QR K+ +T ++Q + M +P + +++VF Y P++G T+AF+N+ + WVGL Sbjct: 15 QRRKKILTTLKQQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQ 74 Query: 90 NFKIILSDKYFWDSVINTLGISFLKLAIGFVIPIILGIMIYELNRGRFKKIVQTISYLPH 149 +F + D F+ + NTL +S + L +GF +PI+ +++ E+ FK+ VQT+SYLPH Sbjct: 75 HFIELFQDNRFYLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPH 134 Query: 150 FLSWIVLGGMLITWFST-SGXXXXXXXXXXXISKPSNILLDAGKYWWIATLSDIWKEAGW 208 F+SW+V+ G++ S G + +P + +W I TLSD+WKE GW Sbjct: 135 FVSWVVVAGIVTKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGW 194 Query: 209 GTILYLAVMSKIDPTYYEAARIDGASRIRQIWNITLPNMKTIISLNLILTVSGLLGSNLD 268 +I++LA M+ IDP YEAA++DGASR RQIW+ITLP ++ I + LIL++ L+ + Sbjct: 195 NSIIFLAAMAGIDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVILILSIGHLMAIGFE 254 Query: 269 QTLVLMNSQNREKAEVINSYVYRMGMTQGDFSYATXXXXXXXXXXXXXXXXXNKITSKLN 328 + +L N + +EV++ Y G+ G +SY T N I + Sbjct: 255 KQFLLGNPLVVDYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCIILLFLANGIFKRFT 314 Query: 329 DNQSVL 334 NQSV+ Sbjct: 315 -NQSVM 319 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 188 bits (478), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 100/287 (34%), Positives = 177/287 (61%), Gaps = 7/287 (2%) Query: 17 SPALQQMGKRPIGQRIKEWVTDFRRQWEIQSMVIPGIIFMIVFCYIPIYGLTIAFKNYTV 76 +P++ + +R Q++K FR ++ + M++PG+++ ++F Y+P++GL IAF++Y Sbjct: 16 APSIPKKVRR--QQKLKR---IFRNKY-LYLMILPGLVYFLIFKYVPMWGLIIAFQDYQP 69 Query: 77 IDTLSSAPWVGLDNFKIILSDKYFWDSVINTLGISFLKLAIGFVIPIILGIMIYELNRGR 136 ++ + WVG +F+ + ++ F+ + NTL + L F +PIIL +++ E+ Sbjct: 70 FLGVTGSEWVGFKHFERLFTEPTFFQLLRNTLVLFLYNLIFFFPVPIILAVLLNEIRLMV 129 Query: 137 FKKIVQTISYLPHFLSWIVLGGMLITWFSTSGXXXXXXXXXXXISKPSNILLDAGKYWWI 196 FK+ VQT+ Y+PHF+SW+++ + F+T G K N L+ + + Sbjct: 130 FKRFVQTMIYIPHFMSWVIVVSLTYVLFTTDGGVINEIIYSIT-GKNVNFLMSEDWFRPL 188 Query: 197 ATLSDIWKEAGWGTILYLAVMSKIDPTYYEAARIDGASRIRQIWNITLPNMKTIISLNLI 256 L IW+EAGW TI+Y A ++ IDP+ YEAA++DGA+R RQIW+ITLP ++++I + LI Sbjct: 189 YILQVIWREAGWATIIYFAAIAAIDPSLYEAAKMDGANRFRQIWHITLPAIRSVIVVLLI 248 Query: 257 LTVSGLLGSNLDQTLVLMNSQNREKAEVINSYVYRMGMTQGDFSYAT 303 L + +L + +++N+ NRE AE+ ++YVY G+ +G FSY+T Sbjct: 249 LKIGDILELGFEHVFLMLNAMNREVAEIFDTYVYTAGLKEGQFSYST 295 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 103/291 (35%), Positives = 169/291 (58%), Gaps = 6/291 (2%) Query: 15 MPSPALQQMGKRPIGQRIKEWVTDFRRQWEIQSMVIPGIIFMIVFCYIPIYGLTIAFKNY 74 M S A+ K + +++K+ +FRR W++ ++IP ++ ++F Y P++G+ +AF++Y Sbjct: 1 MESQAVTSNAKT-VERKLKKQKWNFRRTWQLHVLLIPALVLALIFQYGPMFGIVMAFQDY 59 Query: 75 TVIDTLSSAPWVGLDNFKIILSDKYFWDSVINTLGISFLKLAIGFVIPIILGIMIYELNR 134 + + WVGL +F + Y + NTL IS LK+ G ++PII+ +++ E+ + Sbjct: 60 KPWLGFTGSEWVGLQHFITMFEYDYAKQVIWNTLVISVLKMIFGLIVPIIVALLLNEMYQ 119 Query: 135 GRFKKIVQTISYLPHFLSWIVLGGMLITWFSTSGXXXXXXXXXXXISKPSNILLDAGKYW 194 K+ VQTI YLP+FLSW++LGG+LI S G I I W Sbjct: 120 MVVKRTVQTIIYLPYFLSWVILGGILIDVLSPDGGIVNQALGLFGIDP---IFFLGSNDW 176 Query: 195 WIAT--LSDIWKEAGWGTILYLAVMSKIDPTYYEAARIDGASRIRQIWNITLPNMKTIIS 252 + T +SD+WKE G+ TI++LA ++ ++P YEAA +DGA+R +Q +ITLP M II Sbjct: 177 FRTTVVISDLWKETGFNTIVFLAAITAVNPNLYEAAVVDGANRWKQTLHITLPAMLPIII 236 Query: 253 LNLILTVSGLLGSNLDQTLVLMNSQNREKAEVINSYVYRMGMTQGDFSYAT 303 + L++ +L + DQ L N + ++I++YVYR+ + GDFSY T Sbjct: 237 VVATLSLGNILNAGFDQIFNLYNPLVYQTGDIIDTYVYRVSLVNGDFSYGT 287 >SP1798 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 305 Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 90/294 (30%), Positives = 159/294 (54%), Gaps = 3/294 (1%) Query: 40 RRQWEIQSMVIPGIIFMIVFCYIPIYGLTIAFKNYTVIDTLSSAPWVGLDNFKIILSDKY 99 ++Q + M +PG++ +F YIP+YG+ IAFK+Y + + + W+G F +S Sbjct: 15 KKQKLLLLMTVPGLVLTFIFKYIPMYGVLIAFKDYNPLKGILGSDWIGFSEFTKFISSPN 74 Query: 100 FWDSVINTLGISFLKLAIGFVIPIILGIMIYELNRGRFKKIVQTISYLPHFLSWIVLGGM 159 F + NTL +S L +GF+ PIIL IM+ +L + KK +Q I Y P+F+S +V+ GM Sbjct: 75 FGILLANTLKLSIYGLLLGFLPPIILAIMLNQLLSEKVKKRIQLILYAPNFISVVVIVGM 134 Query: 160 LITWFSTSGXXXXXXXXXXXISKPSNILLDAGKYWWIATLSDIWKEAGWGTILYLAVMSK 219 + +FS G ++ L + + + S IW+ GW + LY A + Sbjct: 135 IFLFFSVGG---PINNFLSMFGMKADFLTNPDFFRPLYIFSGIWQGMGWASTLYTATLVN 191 Query: 220 IDPTYYEAARIDGASRIRQIWNITLPNMKTIISLNLILTVSGLLGSNLDQTLVLMNSQNR 279 +DP EAAR+DGA+ ++IW+I +P +K I+ + +L G++ ++ ++ S N Sbjct: 192 VDPALVEAARLDGANIFQRIWHIDIPALKPIMVIQFVLAAGGIMNVGYEKAFLMQTSLNL 251 Query: 280 EKAEVINSYVYRMGMTQGDFSYATXXXXXXXXXXXXXXXXXNKITSKLNDNQSV 333 +E+I++YVY++G+ GD+SY+T N+I ++N+ + + Sbjct: 252 PTSEIISTYVYKVGLVSGDYSYSTAVGLFNAVINVVLLVAVNQIVKRMNNGEGI 305 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.324 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,620,299 Number of extensions: 808898 Number of successful extensions: 2750 Number of sequences better than 1.0e-05: 106 Number of HSP's gapped: 2662 Number of HSP's successfully gapped: 106 Length of query: 334 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 227 Effective length of database: 26,037,693 Effective search space: 5910556311 Effective search space used: 5910556311 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 116 (49.3 bits)