BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0037.p (291 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 207 1e-53 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 206 5e-53 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 201 1e-51 BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 181 1e-45 SP1797 [G] COG0395 ABC-type sugar transport system, permease com... 164 1e-40 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 108/258 (41%), Positives = 163/258 (63%), Gaps = 6/258 (2%) Query: 36 SSLSSGKALAEGGFIFWSKEFSLENYRAVFNDNTIWQSFLVSISKTFVGVITHVFFCAMI 95 +S ++ + + FI FSL+ YR +F+ + I++S LVS+ T +G +F +++ Sbjct: 31 ASFATVEEVVSKKFILIPTTFSLDAYRYIFSTDIIYKSLLVSVFVTVIGTAVSMFLSSLM 90 Query: 96 GYGLSKRYIKGRKLYVAMGVITMFFSGGMIPTYLLIKSLGLLNSFWVYIIPALFSYYDVV 155 YGLS+R + GR+ + + V TM FSGGMIPT+L++KSLGLL+S+W I+P + ++++ Sbjct: 91 AYGLSRRDLIGRQPLMFLVVFTMLFSGGMIPTFLVVKSLGLLDSYWALILPTAINAFNLI 150 Query: 156 ILMNFFRNVPDSLEESAKIDGAGDWRIFLKIFIPLSMPAMATIALFNGVGQWNDFMTTKL 215 IL NFF+N+P SLEESAKIDG D IF KI +PLS+PA+ATI+LF V WN +MT L Sbjct: 151 ILKNFFQNIPSSLEESAKIDGCNDLGIFFKIVLPLSLPAIATISLFYAVTYWNTYMTAIL 210 Query: 216 YITNQALYPLQMKLYEIIVQSQTQ--SMQNIG-GSAVIETTTKGVQLAXXXXXXXXXXXX 272 Y+ + A +P+Q+ L +I++ S M +G GS E T K +A Sbjct: 211 YLNDSAKWPIQVLLRQIVIVSSGMQGDMSEMGSGSPPPEQTIK---MAVIVVATIPVLLV 267 Query: 273 YPLLQRYFISGMMLGAVK 290 YP +Q++F G +LG+VK Sbjct: 268 YPFIQKHFAKGALLGSVK 285 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 206 bits (523), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 101/255 (39%), Positives = 164/255 (64%), Gaps = 1/255 (0%) Query: 37 SLSSGKALAEGGFIFWSKEFSLENYRAVFNDNTIWQSFLVSISKTFVGVITHVFFCAMIG 96 S +S + + + FI + FSL+ YR +F+ + I++S ++SI T VG +F +++ Sbjct: 38 SFASVEEVLQKRFILFPTTFSLDAYRYIFSTDIIFRSLIISILVTVVGTGFSMFLTSLMA 97 Query: 97 YGLSKRYIKGRKLYVAMGVITMFFSGGMIPTYLLIKSLGLLNSFWVYIIPALFSYYDVVI 156 YGLS++ + GR++ + + V TM FSGGMIPT+L+++SLGLL+++W IIP + ++++I Sbjct: 98 YGLSRKDLDGRRVLMFLVVFTMLFSGGMIPTFLVVRSLGLLDTYWALIIPTAINAFNLII 157 Query: 157 LMNFFRNVPDSLEESAKIDGAGDWRIFLKIFIPLSMPAMATIALFNGVGQWNDFMTTKLY 216 L NFF+N+P+SLEESAKIDG D IF +I PLSMPA+ATI+LF V WN FM LY Sbjct: 158 LKNFFQNIPESLEESAKIDGCNDVGIFFRIVFPLSMPAIATISLFYAVTYWNTFMQAILY 217 Query: 217 ITNQALYPLQMKLYEIIVQSQ-TQSMQNIGGSAVIETTTKGVQLAXXXXXXXXXXXXYPL 275 + + +++P+Q+ L +I++ S Q G+ + + +++A YP Sbjct: 218 LNDSSMWPIQVLLRQIVIMSSGMQGDLTELGAGFVMPPEQTIKMAVIVVATIPVLIVYPF 277 Query: 276 LQRYFISGMMLGAVK 290 +Q++F G +LG+VK Sbjct: 278 IQKHFAKGALLGSVK 292 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 107/259 (41%), Positives = 158/259 (61%), Gaps = 11/259 (4%) Query: 37 SLSSGKALAEGGFIFWSKEFSLENYRAVFNDNTIWQSFLVSISKTFVGVITHVFFCAMIG 96 S ++ LA+ F + K F+L+ Y+ VF+ T +S VSI T VG +FF + Sbjct: 42 SFATEAELAQRSFFIFPKTFTLDAYKYVFSTPTFLRSMGVSIFITVVGTAVQLFFTFTMA 101 Query: 97 YGLSKRYIKGRKLYVAMGVITMFFSGGMIPTYLLIKSLGLLNSFWVYIIPALFSYYDVVI 156 Y L+KR++KGR L + + + +M FSGGMIPTYL++KSLGLL+++W I+P + ++++I Sbjct: 102 YPLAKRHVKGRNLLLNLVIFSMLFSGGMIPTYLVVKSLGLLDTYWALILPMAINPFNLII 161 Query: 157 LMNFFRNVPDSLEESAKIDGAGDWRIFLKIFIPLSMPAMATIALFNGVGQWNDFMTTKLY 216 + NFF+ +P LEESAKIDG + +F +I +PLS P +AT ALF VG WNDF LY Sbjct: 162 IKNFFQQLPRELEESAKIDGCSEIGVFWRIALPLSKPVIATFALFYAVGIWNDFFHALLY 221 Query: 217 ITNQALYPLQMKLYEIIVQSQT-----QSMQNIGGSAVIETTTKGVQLAXXXXXXXXXXX 271 I + A +PLQM L ++ + S +MQN AV +G++LA Sbjct: 222 INDSAKWPLQMVLRQVTILSDLTATNGDTMQN----AV--PPEQGIKLAVIVIATLPILA 275 Query: 272 XYPLLQRYFISGMMLGAVK 290 YP LQ++F GM++G+VK Sbjct: 276 VYPFLQKHFAKGMLIGSVK 294 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 105/262 (40%), Positives = 156/262 (59%), Gaps = 13/262 (4%) Query: 37 SLSSGKALAEGGFIFWSKEFSLENY-RAVFNDNTIWQSFLVSISKTFVGVITHV--FFCA 93 SLS A A +F +F+L+ Y R + NDN I +SFL+S+ + +G + + CA Sbjct: 38 SLSGSGAAAANLVMFLPVDFTLDAYERTIANDNFI-RSFLISVVRVVLGTVISMGAMLCA 96 Query: 94 MIGYGLSK--RYIKGRKLYVAMGVITMFFSGGMIPTYLLIKSLGLLNSFWVYIIPALFSY 151 Y LSK R KGRK Y+ VITM F+GG++PTY+++ LGL N+ W ++P + Sbjct: 97 --AYALSKEDRDFKGRKFYIWFFVITMLFNGGLVPTYMVVTGLGLTNTIWALVLPPAINA 154 Query: 152 YDVVILMNFFRN-VPDSLEESAKIDGAGDWRIFLKIFIPLSMPAMATIALFNGVGQWNDF 210 +++++L+NFFR VP SLEESA IDGA ++IFLKI++P+S+PA+AT++LF V WN + Sbjct: 155 FNLILLLNFFRTAVPKSLEESAFIDGANHFQIFLKIYLPISVPAIATVSLFTMVFHWNSW 214 Query: 211 MTTKLYITNQALYPLQMKLYEIIVQSQTQSMQNIGGSAVIET-TTKGVQLAXXXXXXXXX 269 +Y + YPLQ L I+VQ Q I + + + + VQ A Sbjct: 215 FDGMIYNNDARNYPLQTFLQTIVVQ---QDFSQITDAETLRNLSQRTVQAAQIFIAALPM 271 Query: 270 XXXYPLLQRYFISGMMLGAVKE 291 YP +Q+YF+ G++LGA KE Sbjct: 272 LIVYPFIQKYFVKGIVLGAEKE 293 >SP1797 [G] COG0395 ABC-type sugar transport system, permease component Length = 305 Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 91/259 (35%), Positives = 144/259 (55%), Gaps = 6/259 (2%) Query: 36 SSLSSGKALAEGGFIFWSKEFSLENYRAVFNDNTIWQSFLVSISKTFVGVITHVFFCAMI 95 +S K L G F ++++E Y+ VF+D +I + F+ S+ +F V Sbjct: 48 ASFMDPKVLVSRGISFNPADWTVEGYQRVFSDQSILRGFINSLLYSFGFAALTVLLSVFT 107 Query: 96 GYGLSKRYIKGRKLYVAMGVITMFFSGGMIPTYLLIKSLGLLNSFWVYIIPALFSYYDVV 155 Y LSK+ + GR+ ++TMFF GG++PTYLL+K LG+LN+ W I+P + ++++ Sbjct: 108 AYPLSKKDLVGRRWINYFLIVTMFFGGGLVPTYLLVKELGMLNTPWAIIVPGAVNVWNII 167 Query: 156 ILMNFFRNVPDSLEESAKIDGAGDWRIFLKIFIPLSMPAMATIALFNGVGQWNDFMTTKL 215 + +F+ +P+ L E+A IDGA D +IF KI +PL+ P M + L+ VGQWN + + Sbjct: 168 LARAYFQGLPEELVEAAVIDGANDLQIFFKIMLPLAKPIMFVLFLYAFVGQWNSYFDAMI 227 Query: 216 YITNQALYPLQMKLYEIIVQSQT-QSMQNIGGSAVIETTTKGVQL---AXXXXXXXXXXX 271 YI + L PLQ+ L +I++QSQ Q M IG A + + +L A Sbjct: 228 YIKDPNLEPLQLVLRKILIQSQPGQDM--IGAQAAMNEMKRLAELIKYATIVISSLPLIV 285 Query: 272 XYPLLQRYFISGMMLGAVK 290 YP Q+YF G+M G++K Sbjct: 286 MYPFFQKYFDKGIMAGSLK 304 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.140 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,443,193 Number of extensions: 661295 Number of successful extensions: 2128 Number of sequences better than 1.0e-05: 153 Number of HSP's gapped: 2008 Number of HSP's successfully gapped: 153 Length of query: 291 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 186 Effective length of database: 26,268,361 Effective search space: 4885915146 Effective search space used: 4885915146 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 115 (48.9 bits)