BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0346.0033.p
         (74 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC2552 [K] COG3655 Predicted transcriptional regulator               131   3e-31
CC0150 [K] COG3655 Predicted transcriptional regulator                 93   9e-20
PA5403 [K] COG3655 Predicted transcriptional regulator                 89   2e-18
PA2785 [K] COG3655 Predicted transcriptional regulator                 82   2e-16
CC3270 [K] COG3655 Predicted transcriptional regulator                 72   2e-13

>CAC2552 [K] COG3655 Predicted transcriptional regulator
          Length = 71

 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/71 (88%), Positives = 69/71 (97%)

Query: 4  MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRLSTLEAICKALECQPG 63
          MAIIINIDVMLAKRKMSVTEL+++VGITMANLSILKNGKAKA+RLSTLEAICKALECQPG
Sbjct: 1  MAIIINIDVMLAKRKMSVTELTDKVGITMANLSILKNGKAKAIRLSTLEAICKALECQPG 60

Query: 64 DILEYRSDEET 74
          DILEY+ D +T
Sbjct: 61 DILEYKRDSDT 71


>CC0150 [K] COG3655 Predicted transcriptional regulator
          Length = 71

 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 55/61 (90%)

Query: 8  INIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRLSTLEAICKALECQPGDILE 67
          +N+D +L +R+MS+TELS+RVG+T+ANLSILK GKA+AVR STL+A+C+ LECQPGD+L 
Sbjct: 1  MNLDRVLLERRMSLTELSDRVGVTIANLSILKTGKARAVRFSTLDALCRELECQPGDLLS 60

Query: 68 Y 68
          +
Sbjct: 61 F 61


>PA5403 [K] COG3655 Predicted transcriptional regulator
          Length = 68

 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 52/67 (77%)

Query: 6  IIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRLSTLEAICKALECQPGDI 65
          III +DV+LAK K+   EL+E +GIT  NLS+LKNGK K +RL TLE IC  L+CQPGDI
Sbjct: 2  IIIRLDVILAKNKVRSKELAEAIGITEQNLSLLKNGKVKGIRLDTLEKICAFLDCQPGDI 61

Query: 66 LEYRSDE 72
          LEY +D+
Sbjct: 62 LEYVADD 68


>PA2785 [K] COG3655 Predicted transcriptional regulator
          Length = 72

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 48/65 (73%)

Query: 4  MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRLSTLEAICKALECQPG 63
          M I I +DVMLA RK    +L++ +GIT  NLS+LK GK K +RL+TLEAIC  L CQPG
Sbjct: 1  MPIEIRLDVMLALRKARSKDLAQAIGITEQNLSLLKQGKVKGIRLATLEAICAYLACQPG 60

Query: 64 DILEY 68
          D+LEY
Sbjct: 61 DLLEY 65


>CC3270 [K] COG3655 Predicted transcriptional regulator
          Length = 75

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 45/63 (71%)

Query: 4  MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRLSTLEAICKALECQPG 63
          M I + + VM+A+R +   +L+  +GIT ANLS+LK GK K VR  TLE IC+ L+C+PG
Sbjct: 1  MPIAVKLGVMMAERNVKSKDLAAYIGITEANLSLLKQGKVKGVRFETLEKICEFLDCEPG 60

Query: 64 DIL 66
          DIL
Sbjct: 61 DIL 63


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.131    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,265,546
Number of extensions: 115580
Number of successful extensions: 371
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 7
Length of query: 74
Length of database: 38,378,431
Length adjustment: 45
Effective length of query: 29
Effective length of database: 33,188,401
Effective search space: 962463629
Effective search space used: 962463629
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)