BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0031.p (550 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3842 [T] COG4753 Response regulator containing CheY-like recei... 86 2e-16 lin0157 [K] COG2207 AraC-type DNA-binding domain-containing prot... 82 2e-15 SPy1556 [T] COG4753 Response regulator containing CheY-like rece... 80 1e-14 BH3679 [T] COG4753 Response regulator containing CheY-like recei... 79 1e-14 BH2109 [T] COG4753 Response regulator containing CheY-like recei... 78 5e-14 >BH3842 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 530 Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 76/118 (64%), Gaps = 2/118 (1%) Query: 417 YLVNTAMKYRDLTAQPKSVAEEIKQYIHAHYGDELTRNDLAEIVYLNPDYLARLFKKETG 476 ++V T ++R T +S+ + Y+H H+ + LT +DLA+ + L+P Y+++LFK+ Sbjct: 400 HIVRTLQEWR--TTDEQSLMLLARDYVHDHFREPLTLDDLAKHIGLSPYYVSKLFKERFD 457 Query: 477 VALGSYVIQVRIAAAKQLLETTRLSVYTIANKVGYTNYSYFSKLFKQEVGLSPNEYKK 534 + YV Q+R+ AKQLL T+ S+ I ++GY + +YFS++FK+ G SP++Y+K Sbjct: 458 LTFSEYVTQLRVEHAKQLLSLTQKSLKEITYEIGYKDPNYFSRVFKKLTGKSPSDYRK 515 >lin0157 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 277 Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 74/116 (63%) Query: 416 EYLVNTAMKYRDLTAQPKSVAEEIKQYIHAHYGDELTRNDLAEIVYLNPDYLARLFKKET 475 E L N +K Q + + EI Y+ H+ ++++ + L++ +Y++P Y++++FK+ET Sbjct: 156 EQLENNGVKLSTDEQQKQMLVNEIIHYMEKHHTEDVSLSTLSQTMYISPAYISKVFKEET 215 Query: 476 GVALGSYVIQVRIAAAKQLLETTRLSVYTIANKVGYTNYSYFSKLFKQEVGLSPNE 531 G + +Y+I++R+ A++LL+ ++V AN VGY + YFSKLFK+ G P+E Sbjct: 216 GESPINYLIKIRLTRAEELLKNKDVTVKQAANMVGYNDAYYFSKLFKKYYGFPPSE 271 >SPy1556 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 246 Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 80/139 (57%), Gaps = 4/139 (2%) Query: 400 LQLHSLTSIEDMEEYLEYLVNTAMK---YRDLTAQPKSVAEEIKQYIHAHYGD-ELTRND 455 L+ S +EDM L + + K ++L QP+ I IH D +LT Sbjct: 104 LKPFSKADVEDMLGKLRKKLELSKKTETIQELVEQPQKEVSAIAMAIHERLADSDLTLKS 163 Query: 456 LAEIVYLNPDYLARLFKKETGVALGSYVIQVRIAAAKQLLETTRLSVYTIANKVGYTNYS 515 LA+ + +P+YL+ L KKE G+ Y++Q R+ AK LL T+ L +Y IA +VG+ + + Sbjct: 164 LAQQLGFSPNYLSVLIKKELGMPFQDYLVQERLKKAKLLLLTSNLKIYEIAEQVGFEDMN 223 Query: 516 YFSKLFKQEVGLSPNEYKK 534 YFS+ FKQ VG++P++YKK Sbjct: 224 YFSQRFKQLVGVTPSQYKK 242 Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 47/86 (54%) Query: 26 MDWTALGIETVYTANNVAQAREIVENHSVQILISDIEMPQGSGLSLLAWIRDNDYPIQTI 85 +D++ I+ V A N A ++ + I+++DI MP+ +G+ L I+ + Sbjct: 21 VDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNGIQLAELIKQESPQTHLV 80 Query: 86 LLTNYADFNYAQKAIELQSFEYFLKP 111 LT Y DFNYA A++L + +Y LKP Sbjct: 81 FLTGYDDFNYALSALKLGADDYLLKP 106 >BH3679 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 257 Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 37/93 (39%), Positives = 57/93 (61%) Query: 442 YIHAHYGDELTRNDLAEIVYLNPDYLARLFKKETGVALGSYVIQVRIAAAKQLLETTRLS 501 YI AH ++ D+A+ V+LNP YL+ LFK++T + Y+ + R+ AK LL +T Sbjct: 162 YIDAHLDQKIGLKDVAKSVHLNPSYLSALFKEKTNMTFSEYLTRKRLQHAKHLLVSTDRP 221 Query: 502 VYTIANKVGYTNYSYFSKLFKQEVGLSPNEYKK 534 + IA K GY YF K+FK+ G++P +Y+K Sbjct: 222 ISDIAEKCGYQTAKYFIKIFKEHEGMTPTQYRK 254 Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 58/96 (60%) Query: 36 VYTANNVAQAREIVENHSVQILISDIEMPQGSGLSLLAWIRDNDYPIQTILLTNYADFNY 95 V TA + +A + ++ ++I+DI MP+ SGL L+ +++ + I+++ Y++F Y Sbjct: 33 VQTAASAKEAITRLNEETIDLIITDIRMPEMSGLHLVKALQEQNPKPVCIVISAYSEFEY 92 Query: 96 AQKAIELQSFEYFLKPIEFDKLMLIIQKAVARAKEQ 131 A A+EL Y LKP++ +KL+ ++ A+ KEQ Sbjct: 93 AHTALELGVRHYLLKPVKKEKLIEAVESALQMKKEQ 128 >BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 525 Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 84/145 (57%), Gaps = 1/145 (0%) Query: 390 KLYSGKVNDRLQLHSLTSIEDMEEYLEYLVNTAMKYRDLTAQP-KSVAEEIKQYIHAHYG 448 K+ S + + ++LT + + + ++++ A+ ++L + KS ++K YI HY Sbjct: 376 KIISAQAMTNWESYNLTFDQLKQVFTKFVLEAAVIIQELRKENMKSDIYKVKTYIENHYH 435 Query: 449 DELTRNDLAEIVYLNPDYLARLFKKETGVALGSYVIQVRIAAAKQLLETTRLSVYTIANK 508 + ++ +A + Y+NP Y+ +LFKK GV Y++++R+ AK+LL T + VY +A + Sbjct: 436 ENISLKSIASLFYMNPVYMGQLFKKTFGVYFKEYLLKLRMNEAKKLLRQTDMRVYEVAER 495 Query: 509 VGYTNYSYFSKLFKQEVGLSPNEYK 533 VG+ + YF F++ ++P EY+ Sbjct: 496 VGFGSTDYFVTQFEKINKMTPTEYR 520 Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 1/102 (0%) Query: 26 MDWTALGIETVYTANNVAQAREIVENHSVQILISDIEMPQGSGLSLLAWIRDN-DYPIQT 84 ++W G E A+N A ++V+ ++I+DI MP GL L+ + + + + Sbjct: 21 IEWEKCGYEVAAEADNGEDAFKLVQEIKPDLVITDIRMPVFDGLQLIQKVNETLSFNTKF 80 Query: 85 ILLTNYADFNYAQKAIELQSFEYFLKPIEFDKLMLIIQKAVA 126 I+++ Y DF+YAQKA+ + ++ LKPI+ D+L + K A Sbjct: 81 IIISGYNDFSYAQKAVRFGAVDFVLKPIDQDELEAALIKLAA 122 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 38,191,577 Number of extensions: 1553238 Number of successful extensions: 4438 Number of sequences better than 1.0e-05: 131 Number of HSP's gapped: 4455 Number of HSP's successfully gapped: 141 Length of query: 550 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 439 Effective length of database: 25,576,357 Effective search space: 11228020723 Effective search space used: 11228020723 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 118 (50.1 bits)