BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0028.p (268 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1798 [G] COG4209 ABC-type polysaccharide transport system, per... 221 7e-58 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 206 4e-53 BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 198 7e-51 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 191 7e-49 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 190 2e-48 >SP1798 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 305 Score = 221 bits (564), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 115/267 (43%), Positives = 169/267 (63%), Gaps = 3/267 (1%) Query: 1 MYGVLIAFKDYSPALGITDSPWAGFKYFEKFFHSYQFSSTIKNTLIISVYSLI-TFPIPV 59 MYGVLIAFKDY+P GI S W GF F KF S F + NTL +S+Y L+ F P+ Sbjct: 39 MYGVLIAFKDYNPLKGILGSDWIGFSEFTKFISSPNFGILLANTLKLSIYGLLLGFLPPI 98 Query: 60 MLALMVNQMRPNRFRRFFQTVSYMPHFISTVVMVGLMMILLSPSTGLVGNLYSLFGKEAP 119 +LA+M+NQ+ + ++ Q + Y P+FIS VV+VG++ + S G + N S+FG +A Sbjct: 99 ILAIMLNQLLSEKVKKRIQLILYAPNFISVVVIVGMIFLFFSVG-GPINNFLSMFGMKA- 156 Query: 120 DLMGSAGWFSSVYVWSDVWQHVGWDSIIFIAALSAGDPSLYEAATVDGASRWHKVRYIDI 179 D + + +F +Y++S +WQ +GW S ++ A L DP+L EAA +DGA+ + ++ +IDI Sbjct: 157 DFLTNPDFFRPLYIFSGIWQGMGWASTLYTATLVNVDPALVEAARLDGANIFQRIWHIDI 216 Query: 180 PMLMPTAITXXXXXXXXXXXXXFEKVYLMQNDLNATSSEILSTYVYKIGLLSSQYSFSSA 239 P L P + +EK +LMQ LN +SEI+STYVYK+GL+S YS+S+A Sbjct: 217 PALKPIMVIQFVLAAGGIMNVGYEKAFLMQTSLNLPTSEIISTYVYKVGLVSGDYSYSTA 276 Query: 240 INLFNTVINFILLIMVNQISKKLSENS 266 + LFN VIN +LL+ VNQI K+++ Sbjct: 277 VGLFNAVINVVLLVAVNQIVKRMNNGE 303 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 206 bits (523), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 105/270 (38%), Positives = 173/270 (64%), Gaps = 3/270 (1%) Query: 1 MYGVLIAFKDYSPALGITDSPWAGFKYFEKFFHSYQFSSTIKNTLIISVYSLITF-PIPV 59 M+G++IAF+DY P LG+T S W GFK+FE+ F F ++NTL++ +Y+LI F P+P+ Sbjct: 57 MWGLIIAFQDYQPFLGVTGSEWVGFKHFERLFTEPTFFQLLRNTLVLFLYNLIFFFPVPI 116 Query: 60 MLALMVNQMRPNRFRRFFQTVSYMPHFISTVVMVGLMMILLSPSTGLVGNL-YSLFGKEA 118 +LA+++N++R F+RF QT+ Y+PHF+S V++V L +L + G++ + YS+ GK Sbjct: 117 ILAVLLNEIRLMVFKRFVQTMIYIPHFMSWVIVVSLTYVLFTTDGGVINEIIYSITGKNV 176 Query: 119 PDLMGSAGWFSSVYVWSDVWQHVGWDSIIFIAALSAGDPSLYEAATVDGASRWHKVRYID 178 LM S WF +Y+ +W+ GW +II+ AA++A DPSLYEAA +DGA+R+ ++ +I Sbjct: 177 NFLM-SEDWFRPLYILQVIWREAGWATIIYFAAIAAIDPSLYEAAKMDGANRFRQIWHIT 235 Query: 179 IPMLMPTAITXXXXXXXXXXXXXFEKVYLMQNDLNATSSEILSTYVYKIGLLSSQYSFSS 238 +P + + FE V+LM N +N +EI TYVY GL Q+S+S+ Sbjct: 236 LPAIRSVIVVLLILKIGDILELGFEHVFLMLNAMNREVAEIFDTYVYTAGLKEGQFSYST 295 Query: 239 AINLFNTVINFILLIMVNQISKKLSENSLW 268 A+ F +++ I++++ N ++KK E ++ Sbjct: 296 AVGFFKSIVGLIMVMLANWLAKKFGEEGVY 325 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 198 bits (503), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 100/270 (37%), Positives = 159/270 (58%), Gaps = 3/270 (1%) Query: 1 MYGVLIAFKDYSPALGITDSPWAGFKYFEKFFHSYQFSSTIKNTLIISVYSLIT-FPIPV 59 ++G +AF+++ P L + W G ++F + F +F ++NTL +S+ LI F +P+ Sbjct: 49 LWGWTMAFQNFRPGLSFFEQEWVGLQHFIELFQDNRFYLVLRNTLAMSIMGLIVGFTMPI 108 Query: 60 MLALMVNQMRPNRFRRFFQTVSYMPHFISTVVMVGLMMILLSPSTGLVGNLYSLFG--KE 117 + A+++N++R F+R QTVSY+PHF+S VV+ G++ +LS G+V L FG + Sbjct: 109 LFAVLLNEVRHMVFKRTVQTVSYLPHFVSWVVVAGIVTKMLSIDGGIVNQLLMAFGFVDQ 168 Query: 118 APDLMGSAGWFSSVYVWSDVWQHVGWDSIIFIAALSAGDPSLYEAATVDGASRWHKVRYI 177 M WF + SD+W+ +GW+SIIF+AA++ DP LYEAA VDGASRW ++ +I Sbjct: 169 PVQFMAKGEWFWVIVTLSDLWKEMGWNSIIFLAAMAGIDPQLYEAAKVDGASRWRQIWHI 228 Query: 178 DIPMLMPTAITXXXXXXXXXXXXXFEKVYLMQNDLNATSSEILSTYVYKIGLLSSQYSFS 237 +P + PT + FEK +L+ N L SE+L Y GL +YS+ Sbjct: 229 TLPGIRPTILVILILSIGHLMAIGFEKQFLLGNPLVVDYSEVLDLYALNYGLGLGRYSYG 288 Query: 238 SAINLFNTVINFILLIMVNQISKKLSENSL 267 +AI +FN+V+ ILL + N I K+ + S+ Sbjct: 289 TAIGIFNSVVCIILLFLANGIFKRFTNQSV 318 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 191 bits (486), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 92/262 (35%), Positives = 165/262 (62%), Gaps = 1/262 (0%) Query: 1 MYGVLIAFKDYSPALGITDSPWAGFKYFEKFFHSYQFSSTIKNTLIISVYSLI-TFPIPV 59 M+G+++AF+DY P LG T S W G ++F F I NTL+ISV +I +P+ Sbjct: 49 MFGIVMAFQDYKPWLGFTGSEWVGLQHFITMFEYDYAKQVIWNTLVISVLKMIFGLIVPI 108 Query: 60 MLALMVNQMRPNRFRRFFQTVSYMPHFISTVVMVGLMMILLSPSTGLVGNLYSLFGKEAP 119 ++AL++N+M +R QT+ Y+P+F+S V++ G+++ +LSP G+V LFG + Sbjct: 109 IVALLLNEMYQMVVKRTVQTIIYLPYFLSWVILGGILIDVLSPDGGIVNQALGLFGIDPI 168 Query: 120 DLMGSAGWFSSVYVWSDVWQHVGWDSIIFIAALSAGDPSLYEAATVDGASRWHKVRYIDI 179 +GS WF + V SD+W+ G+++I+F+AA++A +P+LYEAA VDGA+RW + +I + Sbjct: 169 FFLGSNDWFRTTVVISDLWKETGFNTIVFLAAITAVNPNLYEAAVVDGANRWKQTLHITL 228 Query: 180 PMLMPTAITXXXXXXXXXXXXXFEKVYLMQNDLNATSSEILSTYVYKIGLLSSQYSFSSA 239 P ++P I F++++ + N L + +I+ TYVY++ L++ +S+ +A Sbjct: 229 PAMLPIIIVVATLSLGNILNAGFDQIFNLYNPLVYQTGDIIDTYVYRVSLVNGDFSYGTA 288 Query: 240 INLFNTVINFILLIMVNQISKK 261 + LF ++I+ +L+I+ +++ K Sbjct: 289 VGLFKSLISLVLIIIGYRLAYK 310 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 102/268 (38%), Positives = 157/268 (58%), Gaps = 1/268 (0%) Query: 1 MYGVLIAFKDYSPALGITDSPWAGFKYFEKFFHSYQFSSTIKNTLIISVYSLI-TFPIPV 59 M+GVLIAFKDYSP LG S W GF YF+ FF + F ++NTL+++ L+ FP P+ Sbjct: 50 MWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLDLLFAFPAPL 109 Query: 60 MLALMVNQMRPNRFRRFFQTVSYMPHFISTVVMVGLMMILLSPSTGLVGNLYSLFGKEAP 119 +LAL++N++R ++R QT Y+PHF+S ++V + + + TG++ L E Sbjct: 110 ILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKLIMSLTGEQI 169 Query: 120 DLMGSAGWFSSVYVWSDVWQHVGWDSIIFIAALSAGDPSLYEAATVDGASRWHKVRYIDI 179 + A WF + V +W+ GW +I+F+AAL+ D YEAA +DGA R+ ++ +I + Sbjct: 170 SFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGAGRFRRMWHITL 229 Query: 180 PMLMPTAITXXXXXXXXXXXXXFEKVYLMQNDLNATSSEILSTYVYKIGLLSSQYSFSSA 239 P + T I FE+VYLM N LN + ++I TYVY +G+ YS+S+A Sbjct: 230 PAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMMGITQGAYSYSTA 289 Query: 240 INLFNTVINFILLIMVNQISKKLSENSL 267 + LF +V+ IL+ N I+KK + L Sbjct: 290 VGLFKSVVGIILIFGANYIAKKFDQEGL 317 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.325 0.137 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,335,289 Number of extensions: 652871 Number of successful extensions: 3161 Number of sequences better than 1.0e-05: 117 Number of HSP's gapped: 3103 Number of HSP's successfully gapped: 117 Length of query: 268 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 163 Effective length of database: 26,268,361 Effective search space: 4281742843 Effective search space used: 4281742843 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 115 (48.9 bits)