BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0027.p (307 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1797 [G] COG0395 ABC-type sugar transport system, permease com... 221 9e-58 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 208 9e-54 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 206 4e-53 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 200 3e-51 BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 179 4e-45 >SP1797 [G] COG0395 ABC-type sugar transport system, permease component Length = 305 Score = 221 bits (564), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 106/258 (41%), Positives = 180/258 (69%), Gaps = 2/258 (0%) Query: 50 ASFSDPSAVAGGQVWLFPKGFTLDGYKELLRHDNIWTGYLNTILYTVVGTVIGLAVNISA 109 ASF DP + + P +T++GY+ + +I G++N++LY+ + + +++ Sbjct: 48 ASFMDPKVLVSRGISFNPADWTVEGYQRVFSDQSILRGFINSLLYSFGFAALTVLLSVFT 107 Query: 110 AYALSRKDLTGRKYISLYFIFTMFFNGGLIPTFLTIRDFQLYDTFLVMVLPFSVGVYNII 169 AY LS+KDL GR++I+ + I TMFF GGL+PT+L +++ + +T +++P +V V+NII Sbjct: 108 AYPLSKKDLVGRRWINYFLIVTMFFGGGLVPTYLLVKELGMLNTPWAIIVPGAVNVWNII 167 Query: 170 VARTFFQTSIPGDLWEAAQIDGCGNLRYFARVVLPLSKAIVAVLGLWIAVGYWNSYFNAL 229 +AR +FQ +P +L EAA IDG +L+ F +++LPL+K I+ VL L+ VG WNSYF+A+ Sbjct: 168 LARAYFQ-GLPEELVEAAVIDGANDLQIFFKIMLPLAKPIMFVLFLYAFVGQWNSYFDAM 226 Query: 230 IYLKNPDMYPLQLILRNILITNQMQSGMGTGEAAQIAL-RLANMMRYSVIIVATVPIMCV 288 IY+K+P++ PLQL+LR ILI +Q M +AA + RLA +++Y+ I+++++P++ + Sbjct: 227 IYIKDPNLEPLQLVLRKILIQSQPGQDMIGAQAAMNEMKRLAELIKYATIVISSLPLIVM 286 Query: 289 YPFVQKYFNQGVMIGAVK 306 YPF QKYF++G+M G++K Sbjct: 287 YPFFQKYFDKGIMAGSLK 304 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 208 bits (529), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 102/256 (39%), Positives = 162/256 (63%), Gaps = 1/256 (0%) Query: 51 SFSDPSAVAGGQVWLFPKGFTLDGYKELLRHDNIWTGYLNTILYTVVGTVIGLAVNISAA 110 SF+ V + LFP F+LD Y+ + D I+ + +IL TVVGT + + A Sbjct: 38 SFASVEEVLQKRFILFPTTFSLDAYRYIFSTDIIFRSLIISILVTVVGTGFSMFLTSLMA 97 Query: 111 YALSRKDLTGRKYISLYFIFTMFFNGGLIPTFLTIRDFQLYDTFLVMVLPFSVGVYNIIV 170 Y LSRKDL GR+ + +FTM F+GG+IPTFL +R L DT+ +++P ++ +N+I+ Sbjct: 98 YGLSRKDLDGRRVLMFLVVFTMLFSGGMIPTFLVVRSLGLLDTYWALIIPTAINAFNLII 157 Query: 171 ARTFFQTSIPGDLWEAAQIDGCGNLRYFARVVLPLSKAIVAVLGLWIAVGYWNSYFNALI 230 + FFQ +IP L E+A+IDGC ++ F R+V PLS +A + L+ AV YWN++ A++ Sbjct: 158 LKNFFQ-NIPESLEESAKIDGCNDVGIFFRIVFPLSMPAIATISLFYAVTYWNTFMQAIL 216 Query: 231 YLKNPDMYPLQLILRNILITNQMQSGMGTGEAAQIALRLANMMRYSVIIVATVPIMCVYP 290 YL + M+P+Q++LR I+I + G T A + ++ +VI+VAT+P++ VYP Sbjct: 217 YLNDSSMWPIQVLLRQIVIMSSGMQGDLTELGAGFVMPPEQTIKMAVIVVATIPVLIVYP 276 Query: 291 FVQKYFNQGVMIGAVK 306 F+QK+F +G ++G+VK Sbjct: 277 FIQKHFAKGALLGSVK 292 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 206 bits (524), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 102/261 (39%), Positives = 166/261 (63%), Gaps = 10/261 (3%) Query: 50 ASFSDPSAVAGGQVWLFPKGFTLDGYKELLRHDNIWTGYLNTILYTVVGTVIGLAVNISA 109 ASF+ V + L P F+LD Y+ + D I+ L ++ TV+GT + + ++ Sbjct: 31 ASFATVEEVVSKKFILIPTTFSLDAYRYIFSTDIIYKSLLVSVFVTVIGTAVSMFLSSLM 90 Query: 110 AYALSRKDLTGRKYISLYFIFTMFFNGGLIPTFLTIRDFQLYDTFLVMVLPFSVGVYNII 169 AY LSR+DL GR+ + +FTM F+GG+IPTFL ++ L D++ ++LP ++ +N+I Sbjct: 91 AYGLSRRDLIGRQPLMFLVVFTMLFSGGMIPTFLVVKSLGLLDSYWALILPTAINAFNLI 150 Query: 170 VARTFFQTSIPGDLWEAAQIDGCGNLRYFARVVLPLSKAIVAVLGLWIAVGYWNSYFNAL 229 + + FFQ +IP L E+A+IDGC +L F ++VLPLS +A + L+ AV YWN+Y A+ Sbjct: 151 ILKNFFQ-NIPSSLEESAKIDGCNDLGIFFKIVLPLSLPAIATISLFYAVTYWNTYMTAI 209 Query: 230 IYLKNPDMYPLQLILRNILITNQ-MQ---SGMGTGEAAQIALRLANMMRYSVIIVATVPI 285 +YL + +P+Q++LR I+I + MQ S MG+G ++ +VI+VAT+P+ Sbjct: 210 LYLNDSAKWPIQVLLRQIVIVSSGMQGDMSEMGSGSPPP-----EQTIKMAVIVVATIPV 264 Query: 286 MCVYPFVQKYFNQGVMIGAVK 306 + VYPF+QK+F +G ++G+VK Sbjct: 265 LLVYPFIQKHFAKGALLGSVK 285 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 97/256 (37%), Positives = 162/256 (63%), Gaps = 3/256 (1%) Query: 51 SFSDPSAVAGGQVWLFPKGFTLDGYKELLRHDNIWTGYLNTILYTVVGTVIGLAVNISAA 110 SF+ + +A ++FPK FTLD YK + +I TVVGT + L + A Sbjct: 42 SFATEAELAQRSFFIFPKTFTLDAYKYVFSTPTFLRSMGVSIFITVVGTAVQLFFTFTMA 101 Query: 111 YALSRKDLTGRKYISLYFIFTMFFNGGLIPTFLTIRDFQLYDTFLVMVLPFSVGVYNIIV 170 Y L+++ + GR + IF+M F+GG+IPT+L ++ L DT+ ++LP ++ +N+I+ Sbjct: 102 YPLAKRHVKGRNLLLNLVIFSMLFSGGMIPTYLVVKSLGLLDTYWALILPMAINPFNLII 161 Query: 171 ARTFFQTSIPGDLWEAAQIDGCGNLRYFARVVLPLSKAIVAVLGLWIAVGYWNSYFNALI 230 + FFQ +P +L E+A+IDGC + F R+ LPLSK ++A L+ AVG WN +F+AL+ Sbjct: 162 IKNFFQ-QLPRELEESAKIDGCSEIGVFWRIALPLSKPVIATFALFYAVGIWNDFFHALL 220 Query: 231 YLKNPDMYPLQLILRNILITNQMQSGMGTGEAAQIALRLANMMRYSVIIVATVPIMCVYP 290 Y+ + +PLQ++LR + I + + + G+ Q A+ ++ +VI++AT+PI+ VYP Sbjct: 221 YINDSAKWPLQMVLRQVTILSDLTA--TNGDTMQNAVPPEQGIKLAVIVIATLPILAVYP 278 Query: 291 FVQKYFNQGVMIGAVK 306 F+QK+F +G++IG+VK Sbjct: 279 FLQKHFAKGMLIGSVK 294 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 179 bits (455), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 92/259 (35%), Positives = 152/259 (58%), Gaps = 5/259 (1%) Query: 51 SFSDPSAVAGGQVWLFPKGFTLDGYKELLRHDNIWTGYLNTILYTVVGTVIGLAVNISAA 110 S S A A V P FTLD Y+ + +DN +L +++ V+GTVI + + AA Sbjct: 38 SLSGSGAAAANLVMFLPVDFTLDAYERTIANDNFIRSFLISVVRVVLGTVISMGAMLCAA 97 Query: 111 YALSR--KDLTGRKYISLYFIFTMFFNGGLIPTFLTIRDFQLYDTFLVMVLPFSVGVYNI 168 YALS+ +D GRK+ +F+ TM FNGGL+PT++ + L +T +VLP ++ +N+ Sbjct: 98 YALSKEDRDFKGRKFYIWFFVITMLFNGGLVPTYMVVTGLGLTNTIWALVLPPAINAFNL 157 Query: 169 IVARTFFQTSIPGDLWEAAQIDGCGNLRYFARVVLPLSKAIVAVLGLWIAVGYWNSYFNA 228 I+ FF+T++P L E+A IDG + + F ++ LP+S +A + L+ V +WNS+F+ Sbjct: 158 ILLLNFFRTAVPKSLEESAFIDGANHFQIFLKIYLPISVPAIATVSLFTMVFHWNSWFDG 217 Query: 229 LIYLKNPDMYPLQLILRNILITNQMQSGMGTGEAAQIALRLANMMRYSVIIVATVPIMCV 288 +IY + YPLQ L+ I++ ++ R ++ + I +A +P++ V Sbjct: 218 MIYNNDARNYPLQTFLQTIVVQQDFSQITDAETLRNLSQR---TVQAAQIFIAALPMLIV 274 Query: 289 YPFVQKYFNQGVMIGAVKE 307 YPF+QKYF +G+++GA KE Sbjct: 275 YPFIQKYFVKGIVLGAEKE 293 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.141 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,197,089 Number of extensions: 801598 Number of successful extensions: 2595 Number of sequences better than 1.0e-05: 136 Number of HSP's gapped: 2390 Number of HSP's successfully gapped: 136 Length of query: 307 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 201 Effective length of database: 26,153,027 Effective search space: 5256758427 Effective search space used: 5256758427 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)