BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0023.p (314 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yfiF [K] COG2207 AraC-type DNA-binding domain-containing prot... 69 1e-11 BH0724 [K] COG2207 AraC-type DNA-binding domain-containing proteins 68 2e-11 VC1260 [K] COG2207 AraC-type DNA-binding domain-containing proteins 67 4e-11 CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing prot... 65 2e-10 Z3647 [K] COG2207 AraC-type DNA-binding domain-containing proteins 64 4e-10 >BS_yfiF [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 345 Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 7/274 (2%), Positives = 28/274 (10%), Gaps = 26/274 (9%) Query: 21 YVNRATETYQLPLHSHDFIELAFVAEGKGFHYIEQEVQHAFKGQLYFIPVGVSHVFRPSS 80 + + + + E Sbjct: 31 RTGKGGGRPGKSRADGGRRPARDDKQSQPR-DRKWEDSPWRTVSRAPGD-------ETPE 82 Query: 81 PASLKEPLVVYNCLFTPGLLEGLTPVIPDPAIAGYVAQIQNHQVSPFTVTDLHGSIES-- 138 A + + + + + Sbjct: 83 KADHGGISGKSFIDPEVLRRQ-------RAEETRVYGENACQALFQSRPEAIVRAWFIQS 135 Query: 139 LFLSLHREYNLPQTGSGTYLLS-----LFIQLVVTLYRFKHDELQF-PVNKQTRFL-HVL 191 + Y + + Q Sbjct: 136 VTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGA 195 Query: 192 RYIQQEYARDITLSHLARAFDWSERHLQRLFQAHTGQTFHHFLQNVRIQKSCGLLARQPN 251 + + +L + + + + Sbjct: 196 QDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHV-QPIT 254 Query: 252 TPIALIAEQVGYRDTKTFSLVFKRIIGKTPGGYR 285 + + GK Sbjct: 255 GDNIVNVLDDFR-QAGYTVVTTSSEQGKPLFKTS 287 >BH0724 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 298 Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/264 (24%), Positives = 116/264 (43%), Gaps = 21/264 (7%) Query: 31 LPLHSHDFIELAFVAEGKGFHYIEQEVQHAFKGQLYFIPVGVSHVFRPSSPASLKEPLVV 90 +PLH HD ++ + +G+ + +E +G FI G H+ + ++ V Sbjct: 40 MPLHWHDELQFVVIIQGEARFQVNEEAIIVQEGDGLFINSGCLHMVEDGNGSN-----CV 94 Query: 91 YNCLFTPGLLEGLTPVIPDPAIAGYVAQIQNHQVSPFTV---TDLHG-SIESLFLSLHR- 145 Y CL P +I YVA P+ + +++ G +I L++H+ Sbjct: 95 YICLNVPA-----QSIISRELYTAYVAPYVQATNLPYVLIPSSEMWGQNIIEATLNIHQC 149 Query: 146 -EYNLP--QTGSGTYLLSLFIQLVVTLYRFKHDELQFPVNKQTRFLHVLRYIQQEYARDI 202 E P + T L ++ L+ + ++D Q + K R +L++I Y +I Sbjct: 150 LEEQPPYYEMDITTKLTVIWKSLITNGFPLEYD--QSAMIKNQRMKAMLQWIHLHYGENI 207 Query: 203 TLSHLARAFDWSERHLQRLFQAHTGQTFHHFLQNVRIQKSCGLLARQPNTPIALIAEQVG 262 L +A+A S R F+ T ++ + RIQKS LL +QP + + +A QVG Sbjct: 208 RLDDIAKAGQLSRSECCRYFKRTLKMTPLQYVTDYRIQKSVTLL-QQPESNVTDVAYQVG 266 Query: 263 YRDTKTFSLVFKRIIGKTPGGYRQ 286 + T F F++ + TP Y++ Sbjct: 267 FNSTSYFIDQFRKAMNMTPLRYKK 290 >VC1260 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 299 Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 1/102 (0%) Query: 192 RYIQQEYARDITLSHLARAFDWSERHLQRLFQAHTGQTFHHFLQNVRIQKSCGLLARQPN 251 +Y++Q YA+ I ++ L SE RLF+ H G +F L+ RI K+C LLA Sbjct: 199 QYVEQHYAQAIKITDLCHQLHLSESSAYRLFEKHYGMSFSEHLKQFRIGKACELLASSA- 257 Query: 252 TPIALIAEQVGYRDTKTFSLVFKRIIGKTPGGYRQEAESATA 293 PIALIAE+ G+ + F+ FK + TP +RQ ++ + Sbjct: 258 LPIALIAERTGFGNLSNFNRQFKTLKTMTPREFRQRFQAVSG 299 >CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 295 Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 7/148 (4%) Query: 145 REYNLPQTGSGTYLLSLFIQLVVTLYRFKHDEL----QFPVNKQ--TRFLHVLRYIQQEY 198 +EY+ G + + QL+V L R D++ +F K+ +F V R I+++Y Sbjct: 139 KEYSSKNIGYELAVKANIYQLIVYLLRGYVDKILNENEFEERKRILNKFQCVFRLIEEKY 198 Query: 199 ARDITLSHLARAFDWSERHLQRLFQAHTGQTFHHFLQNVRIQKSCGLLARQPNTPIALIA 258 +TL+ LA ++S H R F+ TG+T ++ +R+ KS L +Q + I IA Sbjct: 199 TEKLTLNELADCVNFSTHHFCRTFKQMTGKTTTDYINGIRLYKSTNYL-KQTDLNITEIA 257 Query: 259 EQVGYRDTKTFSLVFKRIIGKTPGGYRQ 286 + G+ + FS +FK+ TP YR+ Sbjct: 258 IKCGFDNNNYFSRLFKKHYDMTPTKYRK 285 >Z3647 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 285 Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 71/279 (25%), Positives = 126/279 (45%), Gaps = 37/279 (13%) Query: 18 LLLYVNRATETYQLPLHSH--DFIELAFVAEGKGFHYIEQEVQHAFKGQLYFIPVGVSHV 75 LL V A++ LP+ S DF L V G+ + +E + Q +G++ FIP +++ Sbjct: 26 LLGRVWFASQPASLPVGSLCIDFPRLDIVLRGEYGNLLEAKQQRLVEGEMLFIPARAANL 85 Query: 76 FRPSSPASLKEPLVVYNCLFTPGLL-----EGLTPVIPDPAIAGYVAQIQNHQVSPFTVT 130 P + +P+++ + +F P L + T + PA + +Q + Sbjct: 86 -----PVN-NKPVMLLSLVFAPTWLGLSFYDSRTTSLLHPARQIQLPSLQRGEGEAMLTA 139 Query: 131 DLHGSIESLFLSLHREYNLPQTGSGTYLLSLFIQLVVTLYRFKHDELQFPV-NKQTR--F 187 H S L E N+ Q LV++L + + P N Q R F Sbjct: 140 LTHLSRSPL------EQNIIQP------------LVLSLLHLCRNVVNMPPGNSQPRGDF 181 Query: 188 LH--VLRYIQQEYARDITLSHLARAFDWSERHLQRLFQAHTGQTFHHFLQNVRIQKSCGL 245 L+ + ++Q YA+ +T +A+ F+ + HL +LF H F +++ VR+ K+ + Sbjct: 182 LYHSICNWVQDNYAQPLTRESVAQFFNITPNHLSKLFAQHGTMRFIEYVRWVRMAKARMI 241 Query: 246 LARQPNTPIALIAEQVGYRDTKTFSLVFKRIIGKTPGGY 284 L + + I +A++ G+ D+ F VF+R G TPG Y Sbjct: 242 LQKY-HLSIHEVAQRCGFPDSDYFCRVFRRQFGLTPGEY 279 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,577,176 Number of extensions: 956886 Number of successful extensions: 3176 Number of sequences better than 1.0e-05: 55 Number of HSP's gapped: 3932 Number of HSP's successfully gapped: 55 Length of query: 314 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 208 Effective length of database: 26,153,027 Effective search space: 5439829616 Effective search space used: 5439829616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 116 (49.3 bits)