BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0345.0026.p (172 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM1682 [O] COG2077 Peroxiredoxin 134 8e-32 STM1667 [O] COG2077 Peroxiredoxin 61 9e-10 SSO2613 [O] COG1225 Peroxiredoxin 58 8e-09 Ta1368m [O] COG1225 Peroxiredoxin 56 3e-08 PAE2732 [O] COG1225 Peroxiredoxin 49 4e-06 >STM1682 [O] COG2077 Peroxiredoxin Length = 168 Score = 134 bits (336), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 69/162 (42%), Positives = 103/162 (63%), Gaps = 4/162 (2%) Query: 11 FKGNPITLVGPELKAGDTAPGFVVSKNLLEDASLSDYAGKIKLISVVPSLDTGVCDAQTR 70 F+GNP+T+ +AG A F + L D SLS YAGK K++++ PS+DTGVC A R Sbjct: 7 FQGNPVTVANVIPQAGSKAQAFTLVAKDLSDVSLSQYAGKRKVLNIFPSIDTGVCAASVR 66 Query: 71 RFNTEAAELGDDVVILTISMDLPFAQARWCGAAGIDRVITLSDHKDASFGLAYGVLIKEF 130 +FN A E+ ++ V+L +S DLPFAQ+R+CGA G+ VITLS ++ F YGV I + Sbjct: 67 KFNQLATEV-ENTVVLCVSADLPFAQSRFCGAEGLSNVITLSTLRNNEFLKNYGVEIVDG 125 Query: 131 RLD---MRSIFVIDKNDTVAYVEYLAEMAEHPNYEAAVAAVK 169 L R++ V+D+ND V + + + E+ P+Y+AA+ +K Sbjct: 126 PLKGLAARAVIVLDENDNVIFSQLVDEITHEPDYDAALNVLK 167 >STM1667 [O] COG2077 Peroxiredoxin Length = 185 Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 8/159 (5%) Query: 8 AATFKGNPITLVGPELKAGDTAPGF--VVSKNLLEDASLSDYAGKIKLISVVPSLDTGVC 65 A TF +TL L G+ P +VS NLL + G K I VVPSLDT VC Sbjct: 30 AVTFGKTQLTLKPGILAEGEPLPCTKGLVSHNLLPGYCI---PGIKKQIIVVPSLDTPVC 86 Query: 66 DAQTRRFNTEAAELGDDVV--ILTISMDLPFAQARWCGAAGIDR-VITLSDHKDASFGLA 122 + Q + ++ G + +SMD PFAQAR+ I +I +SD+ F Sbjct: 87 EWQVKDYSDRLKSAGSHSTRAVYVLSMDTPFAQARFIREHDIHPGIIFVSDYACRQFLDN 146 Query: 123 YGVLIKEFRLDMRSIFVIDKNDTVAYVEYLAEMAEHPNY 161 G+ I E + R++ D+N+ V V ++ P Y Sbjct: 147 SGLKINELSIFARALIECDENNVVTRVSVPRDITHLPVY 185 >SSO2613 [O] COG1225 Peroxiredoxin Length = 156 Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 9/156 (5%) Query: 23 LKAGDTAPGF-VVSKNLLEDASLSDYAGKIKLISVVPSLDTGVCDAQTRRFNTEAAELGD 81 ++ G+ AP +V +L + SD+ GK+ +++ P+ T VC + F A+ + Sbjct: 2 VEIGEKAPEIELVDTDLKKVKIPSDFKGKVVVLAFYPAAFTSVCTKEMCTFRDSMAKFNE 61 Query: 82 -DVVILTISMDLPFAQARWCGAAGIDRVITLSDHKDASFGLAYGV-----LIKEFRLDMR 135 + V++ IS+D PF+ + I+ I +++A AYGV ++K + L R Sbjct: 62 VNAVVIGISVDPPFSNKAFKEQNKINFTIVSDFNREAV--KAYGVAGELPILKGYVLAKR 119 Query: 136 SIFVIDKNDTVAYVEYLAEMAEHPNYEAAVAAVKEL 171 S+FVIDKN V Y + + PNY+ V +L Sbjct: 120 SVFVIDKNGIVRYKWVSEDPTKEPNYDEIKDVVTKL 155 >Ta1368m [O] COG1225 Peroxiredoxin Length = 157 Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 9/156 (5%) Query: 23 LKAGDTAPGFVVSKNLLEDASLSDYAGKIKLISVVPSLDTGVCDAQTRRFNTEAAELGD- 81 +K GD AP F L+ LSD+ G+ +++ P T VC + F A Sbjct: 3 VKVGDKAPDFEAPDTNLKMRKLSDFKGQKVVLAFFPGAITSVCTKEMCTFRDSMANFNKV 62 Query: 82 DVVILTISMDLPFAQARWCGAAGIDRVITLSDHKDASFGLAYGVLIKEF------RLDMR 135 + ++ IS+D PF+ A + + L + YGVL + F R Sbjct: 63 NAKVIGISVDSPFSLAEFAKKNNL--TFDLLSDSNREISKKYGVLHENFVNVPGLTASKR 120 Query: 136 SIFVIDKNDTVAYVEYLAEMAEHPNYEAAVAAVKEL 171 S+FVIDK+ V Y + + PNY+ V +L Sbjct: 121 SVFVIDKDGIVRYAWVSDDPGKEPNYKEVQDFVSKL 156 >PAE2732 [O] COG1225 Peroxiredoxin Length = 162 Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 11/158 (6%) Query: 23 LKAGDTAPGFVVSKNLLEDASLSDY--AGKIKLISVVPSLDTGVCDAQTRRFNTEAAELG 80 LK GD AP F + L+ LS+ G+ ++ P T VC + F + A L Sbjct: 3 LKVGDKAPDFELLNEELKPVRLSEVLKRGRPVVLLFFPGAFTSVCTKELCTFRDKMALLN 62 Query: 81 D-DVVILTISMDLPFAQARWCGAAGIDRVITLSDHKDASFGLAYGVL------IKEFRLD 133 + +L IS+D PFA + A ++ + LSD+ G+ Y V+ + + L Sbjct: 63 KANAEVLAISVDSPFALKAFKDANRLNFPL-LSDYNRIVIGM-YDVVQANLLGLPLYHLA 120 Query: 134 MRSIFVIDKNDTVAYVEYLAEMAEHPNYEAAVAAVKEL 171 R++++ID T+ YV Y + + P Y+ + +++ Sbjct: 121 KRAVYIIDPTGTIRYVWYSDDPRDEPPYDEVIKEAEKI 158 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 12,273,610 Number of extensions: 443524 Number of successful extensions: 863 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 868 Number of HSP's successfully gapped: 7 Length of query: 172 Length of database: 38,378,431 Length adjustment: 99 Effective length of query: 73 Effective length of database: 26,960,365 Effective search space: 1968106645 Effective search space used: 1968106645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 112 (47.8 bits)