BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0345.0013.p
         (477 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ykuD [S] COG1376 Uncharacterized protein conserved in bacteria      87   7e-17
STM1686 [P] COG0607 Rhodanese-related sulfurtransferase                86   1e-16
SMc00924 [S] COG1376 Uncharacterized protein conserved in bacteria     73   1e-12
BH1465 [S] COG1376 Uncharacterized protein conserved in bacteria       73   1e-12
BMEII1059 [S] COG1376 Uncharacterized protein conserved in bacteria    72   2e-12

>BS_ykuD [S] COG1376 Uncharacterized protein conserved in bacteria
          Length = 164

 Score = 86.7 bits (213), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 6/122 (4%)

Query: 325 GQPPFFSSPLAIIVDKQNHRLAVTSGNIILRNYAVGLGG--EKTPEGEFVISDKVVNPNG 382
           G P  ++ P  I V      L ++  N +++ Y + +G    +TP GEF I ++  NP G
Sbjct: 47  GLPDPYTIPYHIAVSIGAKTLTLSLNNRVMKTYPIAVGKILTQTPTGEFYIINRQRNPGG 106

Query: 383 HDNGEFGSRGMQLSDTNYAIHGTNEPDSIGKDESLGCIRMKREDVEELFAMVPMGTKVQI 442
                FG+  + LS  +Y IHGTN P SIGK  S GCIRM  +DV EL ++VP GT+V I
Sbjct: 107 ----PFGAYWLSLSKQHYGIHGTNNPASIGKAVSKGCIRMHNKDVIELASIVPNGTRVTI 162

Query: 443 SK 444
           ++
Sbjct: 163 NR 164


>STM1686 [P] COG0607 Rhodanese-related sulfurtransferase
          Length = 104

 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 0/131 (0%), Positives = 0/131 (0%), Gaps = 11/131 (8%)

Query: 325 GQPPFFSSPLAIIVDKQNHRLAVTSGNIILRNYAVGLG-GEKTPEGEFVISDKVVNPNGH 383
                                                                       
Sbjct: 255                                                              314

Query: 384 DNGEF----------GSRGMQLSDTNYAIHGTNEPDSIGKDESLGCIRMKREDVEELFAM 433
                                                                       
Sbjct: 315                                                              374

Query: 434 VPMGTKVQISK 444
                      
Sbjct: 375             385


>SMc00924 [S] COG1376 Uncharacterized protein conserved in bacteria
          Length = 246

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 64/134 (47%), Gaps = 24/134 (17%)

Query: 333 PLAIIVDKQNHRLAVTSGNIILRNYAVGLGGEKTP-EGEFVISDKVVNPN---------- 381
           P  I++D  N  L + +GN   R Y VG+G       GE  I+ K   PN          
Sbjct: 112 PGTIVIDTNNRFLYLVTGNGEARRYGVGVGKPGFEWAGEHRITRKAEWPNWTPPQEMIAR 171

Query: 382 ----GH------DNGE---FGSRGMQLSDTNYAIHGTNEPDSIGKDESLGCIRMKREDVE 428
               GH      D G     G+R M L  T Y IHGTN P +IG   S GCIRM+ EDV 
Sbjct: 172 EAARGHYLPARMDGGPENPLGARAMYLGSTLYRIHGTNAPWTIGYGVSSGCIRMRNEDVV 231

Query: 429 ELFAMVPMGTKVQI 442
           +L+  V +GTKV +
Sbjct: 232 DLYERVKVGTKVIV 245


>BH1465 [S] COG1376 Uncharacterized protein conserved in bacteria
          Length = 170

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 71/143 (49%), Gaps = 16/143 (11%)

Query: 325 GQPPFFSSPLAIIVDKQNHRLAVTSGNIILRNYAVGLG--GEKTPEGEFVISDKVVNP-- 380
           G  P    P  +IV+   +RLA      I +   +  G   +KTP G F I+ K   P  
Sbjct: 21  GPNPTVGDPF-LIVNIATNRLAYVDEGKIQKIVPIATGKPSDKTPVGLFTITVKAEQPYY 79

Query: 381 ------NGHDNGEFGSR--GMQLSDT---NYAIHGTNEPDSIGKDESLGCIRMKREDVEE 429
                  G      G+R  G    DT    Y IHGTN P+SIG+  + GCIR++ ++VEE
Sbjct: 80  RKKNIAGGDPKNPLGTRWLGFDAKDTEGRTYGIHGTNRPESIGRYVTAGCIRLQNKEVEE 139

Query: 430 LFAMVPMGTKVQISKGVLPDELL 452
           L+A +P+GTK+ I   V+  E L
Sbjct: 140 LYANIPLGTKILIVDYVVSFEAL 162


>BMEII1059 [S] COG1376 Uncharacterized protein conserved in bacteria
          Length = 277

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 24/134 (17%)

Query: 333 PLAIIVDKQNHRLAVTSGNIILRNYAVGLGGEK------------------TPEGEFVIS 374
           P  I++D  +  L +   +   R Y VG+G +                   TP  E +  
Sbjct: 143 PGTIVIDTASRFLYLVQADGKARRYGVGVGKQGFSWKGTQRISRKAEWPTWTPPSEMIAR 202

Query: 375 DKV------VNPNGHDNGEFGSRGMQLSDTNYAIHGTNEPDSIGKDESLGCIRMKREDVE 428
           ++          +G  N   G+R + L  T Y IHGTN+P +IGK  S GCIRM+ EDV 
Sbjct: 203 ERKKGRFLPARMDGGINNPLGARALYLGSTLYRIHGTNQPWTIGKAMSSGCIRMRNEDVT 262

Query: 429 ELFAMVPMGTKVQI 442
           +L+   P+GT+V +
Sbjct: 263 DLYERTPVGTRVVV 276


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.311    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 32,348,627
Number of extensions: 1221393
Number of successful extensions: 1269
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 1258
Number of HSP's successfully gapped: 33
Length of query: 477
Length of database: 38,378,431
Length adjustment: 110
Effective length of query: 367
Effective length of database: 25,691,691
Effective search space: 9428850597
Effective search space used: 9428850597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 118 (50.1 bits)