BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0345.0009.p (277 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0642 [S] COG2357 Uncharacterized protein conserved in bacteria 286 3e-77 BS_yjbM [S] COG2357 Uncharacterized protein conserved in bacteria 250 2e-66 lin0966 [S] COG2357 Uncharacterized protein conserved in bacteria 246 2e-65 SA0864 [S] COG2357 Uncharacterized protein conserved in bacteria 243 2e-64 BH2849 [S] COG2357 Uncharacterized protein conserved in bacteria 243 3e-64 >CAC0642 [S] COG2357 Uncharacterized protein conserved in bacteria Length = 262 Score = 286 bits (732), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 137/251 (54%), Positives = 184/251 (73%) Query: 8 MDVRDWGTFLLPYEQTVEELKVKFKTMRSELKKREEYTPIEFVTGRVKRLSSILEKAQRL 67 M +W +FL+PYEQ VEELKVKFK++R E +KR EY+PIEFVTGRVK +SSILEKA + Sbjct: 1 MATIEWKSFLIPYEQAVEELKVKFKSIRKEYRKRNEYSPIEFVTGRVKEISSILEKANKF 60 Query: 68 NVKMEDLETGIEDIAGIRIMCQFVEDIRRVAEYIRARKDLEVLYEKDYITNYKESGYRSF 127 N+ E + +EDI GIRIMCQFV+D+ +V IR+RKD+ ++YEKDY+TN K SGYRS+ Sbjct: 61 NIPDERIMLEMEDICGIRIMCQFVDDVTKVVNIIRSRKDMHIMYEKDYVTNVKSSGYRSY 120 Query: 128 HMIIKYPVQTALGQKIVLAEIQIRTLAMNFWATIEHSLNYKYRESLPDEMRLRLKTAAEA 187 H+IIKYPV A GQ+ ++AEIQIRTLAMNFWATIEHSLNYKY+ +PDE++ +LK AA+A Sbjct: 121 HIIIKYPVSMAEGQRDIIAEIQIRTLAMNFWATIEHSLNYKYKHDIPDEIKAKLKIAADA 180 Query: 188 ASILDSEMSSIRDEILEAQKTFEDNSNTTTQLLKAIHQLYFYHLVNEAIESQERFNQIWQ 247 A LD M I+DEI +AQK FE S+ + +++ I + ++EA + + NQ+ Sbjct: 181 AFQLDGHMLEIKDEIKDAQKLFEVKSSIVSNIIRNILTITSMGKLSEADIYKSKLNQLIN 240 Query: 248 AQDMDAMKELL 258 ++ + LL Sbjct: 241 KGEVFELNNLL 251 >BS_yjbM [S] COG2357 Uncharacterized protein conserved in bacteria Length = 235 Score = 250 bits (638), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 6/211 (2%), Positives = 27/211 (12%), Gaps = 1/211 (0%) Query: 8 MDVRDWGTFLLPYEQTVEELKVKFKTMRSELKKREEYTPIEFVTGRVKRLSSILEKAQRL 67 M V + + + + + + Sbjct: 1 MWVNKYIDDCTDEDLNDRDFIASVVDRAIFHFAINSICNPGDNKDAMPIEQCTFDVETKN 60 Query: 68 NVKMEDLETGIEDIAGIRIMCQFVEDIRRVAEYIRARKDLEVLYEKDYITNYKESGYRSF 127 ++ E+ + E + Sbjct: 61 DLPSTVQLF-YEESKDNEPLANIHFQAIGSGFLTFVNACQEHDDNSLKLFASLLISLSYS 119 Query: 128 HMIIKYPVQTALGQKIVLAEIQIRTLAMNFWATIEHSLNYKYRESLPDEMRLRLKTAAEA 187 + + + + L + Sbjct: 120 SAYADLSETVYINENNESYLKAQFEKLSQRDMKKYLGEMKRLADGGEMNFDGYLDKMSHL 179 Query: 188 ASILDSEMSSIRDEILEAQKTFEDNSNTTTQ 218 + + + A + + Sbjct: 180 VNEGTLDPDILSKMRDAAPQLISFAKSFDPT 210 >lin0966 [S] COG2357 Uncharacterized protein conserved in bacteria Length = 222 Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 119/214 (55%), Positives = 158/214 (73%), Gaps = 1/214 (0%) Query: 13 WGTFLLPYEQTVEELKVKFKTMRSELKKREEYTPIEFVTGRVKRLSSILEKAQRLNVKME 72 W FL PY+Q VEELK+K K MRS+ + ++PIEFVTGRVK ++SIL+KA + ++ ++ Sbjct: 4 WEDFLAPYKQAVEELKIKLKGMRSQFELENNHSPIEFVTGRVKPVASILDKANQKHIALD 63 Query: 73 DLETGIEDIAGIRIMCQFVEDIRRVAEYIRARKDLEVLYEKDYITNYKESGYRSFHMIIK 132 L ++DIAG+R+MCQFV+DI V +R R D ++ E+DYITN K SGYRS+H++I+ Sbjct: 64 HLVEEMQDIAGLRMMCQFVDDIEVVVRLLRQRNDFRIVEERDYITNKKPSGYRSYHVVIE 123 Query: 133 YPVQTALGQKIVLAEIQIRTLAMNFWATIEHSLNYKYRESLPDEMRLRLKTAAEAASILD 192 YPV+T G+K +LAEIQIRTLAMNFWATIEHS+NYKY+ P+ + RLK AAEAA LD Sbjct: 124 YPVETIQGEKKILAEIQIRTLAMNFWATIEHSVNYKYQGEFPEAINKRLKRAAEAAFQLD 183 Query: 193 SEMSSIRDEILEAQKTFEDNSNTTTQLLKAIHQL 226 EMS IR+EI EAQ F N + + KA+HQ+ Sbjct: 184 EEMSQIREEIQEAQVYFSQNKDVSKD-KKAVHQV 216 >SA0864 [S] COG2357 Uncharacterized protein conserved in bacteria Length = 211 Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 117/197 (59%), Positives = 151/197 (76%) Query: 13 WGTFLLPYEQTVEELKVKFKTMRSELKKREEYTPIEFVTGRVKRLSSILEKAQRLNVKME 72 W FL PY+Q V+ELKVK K MR + + E+ +PIEFVTGRVK ++SI++KA + + + Sbjct: 4 WDQFLTPYKQAVDELKVKLKGMRKQYEVGEQASPIEFVTGRVKPIASIIDKANKRQIPFD 63 Query: 73 DLETGIEDIAGIRIMCQFVEDIRRVAEYIRARKDLEVLYEKDYITNYKESGYRSFHMIIK 132 L + DIAG+R+MCQFVEDI V +R RKD +V+ E+DYI N KESGYRS+H+II+ Sbjct: 64 RLREEMYDIAGLRMMCQFVEDIDVVVNILRQRKDFKVIEERDYIRNTKESGYRSYHVIIE 123 Query: 133 YPVQTALGQKIVLAEIQIRTLAMNFWATIEHSLNYKYRESLPDEMRLRLKTAAEAASILD 192 YP++T GQK +LAEIQIRTLAMNFWATIEH+L YKY + PDE++ RL+ AAEAA +LD Sbjct: 124 YPIETLQGQKFILAEIQIRTLAMNFWATIEHTLRYKYDGAYPDEIQHRLERAAEAAYLLD 183 Query: 193 SEMSSIRDEILEAQKTF 209 EMS I+DEI EAQK + Sbjct: 184 EEMSEIKDEIQEAQKYY 200 >BH2849 [S] COG2357 Uncharacterized protein conserved in bacteria Length = 211 Score = 243 bits (619), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 114/196 (58%), Positives = 152/196 (77%) Query: 12 DWGTFLLPYEQTVEELKVKFKTMRSELKKREEYTPIEFVTGRVKRLSSILEKAQRLNVKM 71 +W FL PY+Q VEELKVK K +R + +K ++TPIEFVTGRVK +SSIL+KA R N+ + Sbjct: 3 NWDVFLTPYKQAVEELKVKLKGIREQYQKSSKHTPIEFVTGRVKPISSILDKAIRKNIPL 62 Query: 72 EDLETGIEDIAGIRIMCQFVEDIRRVAEYIRARKDLEVLYEKDYITNYKESGYRSFHMII 131 + LE ++D+AG+RI+ QFVEDI V + IR+R D E++ E+DY+ K+SGYRS+H+++ Sbjct: 63 DQLEEKMQDLAGLRIVTQFVEDIETVVQLIRSRSDFEIVEERDYVEQKKDSGYRSYHLVL 122 Query: 132 KYPVQTALGQKIVLAEIQIRTLAMNFWATIEHSLNYKYRESLPDEMRLRLKTAAEAASIL 191 +YPVQT G+K +L E+QIRTLAMNFWATIEHSLNYKY +P ++ RL+ AAEAA L Sbjct: 123 RYPVQTIEGEKRILVELQIRTLAMNFWATIEHSLNYKYSGEIPLNIKTRLQRAAEAAFRL 182 Query: 192 DSEMSSIRDEILEAQK 207 D EMS IRDE+ EAQ+ Sbjct: 183 DEEMSQIRDEVREAQQ 198 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,087,594 Number of extensions: 698303 Number of successful extensions: 2007 Number of sequences better than 1.0e-05: 21 Number of HSP's gapped: 2012 Number of HSP's successfully gapped: 21 Length of query: 277 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 172 Effective length of database: 26,268,361 Effective search space: 4518158092 Effective search space used: 4518158092 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)