BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0344.0002.p (292 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 149 5e-36 BS_yurN [G] COG1175 ABC-type sugar transport systems, permease c... 145 8e-35 slr1202 [G] COG1175 ABC-type sugar transport systems, permease c... 143 4e-34 TM0811 [G] COG1175 ABC-type sugar transport systems, permease co... 127 2e-29 PH1215 [G] COG1175 ABC-type sugar transport systems, permease co... 123 3e-28 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 86/273 (31%), Positives = 138/273 (50%), Gaps = 8/273 (2%) Query: 22 YSVILIYPVLQTVVRSFYDWDGLSTAAFSGIANYRELFNDPLLSTSLKNGLIFALVLAGF 81 + + + P+L ++ SF DWD +ST F+G NY+ LFNDP S +N + F + G+ Sbjct: 24 FLIFIAIPILGSLGISFTDWDLVSTIHFTGFENYKRLFNDPEFWKSFRNTITFII---GY 80 Query: 82 QIGLGTVLALVCA---NPRTRGRKLLKTAYFIPVVLSVTVVCQLWIAMYDPTNGLVNKLF 138 + +L L CA N + + R + YF+PV+ S V +W +++P+ GL+N Sbjct: 81 LPSV-MILGLACALMLNQKIKLRPFFRAVYFLPVITSWVAVSLVWKWLFNPSYGLINYFL 139 Query: 139 ELLNIPYRQNWLSSPTQSIIAIAFVNAWQFMGYQFSLLYAGVKAVPEDYFEAATIDGCGK 198 L+ I NWL+ P ++IA+ +AW+ +G+ L G++ + Y+EAA +DG K Sbjct: 140 SLIGIA-GPNWLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQNISPSYYEAANMDGASK 198 Query: 199 WRAHWHVTLPLMRETYKFCFTIAITSGIGAFVQMLIMTNGGPGTTNYTMTFMIYRYAFME 258 R + +T+PL+ T F I++ + F Q++IMT GGP T+ IY +AF Sbjct: 199 LRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGGPSGATMTLVQNIYNHAFRY 258 Query: 259 SNYGYACXXXXXXXXXXXXXXXXXNKVFDRGQN 291 GYA NK+ R N Sbjct: 259 FEMGYASAMSWILFIVIFIITIIQNKLQKRWSN 291 >BS_yurN [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 145 bits (366), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 76/266 (28%), Positives = 137/266 (51%), Gaps = 3/266 (1%) Query: 29 PVLQTVVRSFYDWDGLS-TAAFSGIANYRELFNDPLLSTSLKNGLIFALVLAGFQIGLGT 87 P+ + V S + W S F G+ NY ELF+DP+ +L N +++A++ Q+ G Sbjct: 26 PIFENVFLSLFQWSSFSPEKTFIGLKNYVELFHDPVFYQALTNNVLYAVISIVCQVFGGL 85 Query: 88 VLALVCANPRTRG-RKLLKTAYFIPVVLSVTVVCQLWIAMYDPTNGLVNKLFELLNIP-Y 145 +LA V + R +T +F+PVV+S+TV+ L+ +Y+P GL+N+L + + + Sbjct: 86 ILAAVLEDKLVRKWSPFFRTVFFLPVVISMTVIALLFDFIYNPETGLLNQLLQAIGLDQL 145 Query: 146 RQNWLSSPTQSIIAIAFVNAWQFMGYQFSLLYAGVKAVPEDYFEAATIDGCGKWRAHWHV 205 + WL + +++++ FV+ WQ +GY L ++ +P++ +EAA +DG GK + +H+ Sbjct: 146 TRAWLGDDSTAMLSVIFVSQWQSVGYIAMLYIVSIQKIPDELYEAARLDGAGKIQQFFHI 205 Query: 206 TLPLMRETYKFCFTIAITSGIGAFVQMLIMTNGGPGTTNYTMTFMIYRYAFMESNYGYAC 265 T+P +E + +T F + I+T GGPG + ++ +Y+ AF + GYA Sbjct: 206 TVPQTKEMSFVAVVMTLTGAFTVFNEPYILTGGGPGKASEVLSTFLYKSAFTKDMMGYAS 265 Query: 266 XXXXXXXXXXXXXXXXXNKVFDRGQN 291 K F G+ Sbjct: 266 AIATVVLIITLALSLMQMKFFKTGKE 291 >slr1202 [G] COG1175 ABC-type sugar transport systems, permease components Length = 298 Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 131/243 (53%), Gaps = 10/243 (4%) Query: 28 YPVLQTVVRSF--YDWDGLSTAAFSGIANYRELFNDPLLSTSLKNGLIFALVLAGFQIGL 85 YP LQ SF Y+ D A+ G+AN+ L+ D + + ++ L++ + + I L Sbjct: 33 YPALQAFSLSFTQYELDLTKAPAWVGLANFERLWRDRVFWLTFRHTLLYLVGVVPLLIML 92 Query: 86 GTVLALVCANPRTRGRKLLKTAYFIPVVLSVTVVCQLWIAMYDPTNGLVNKLFELLNIPY 145 LA + N + RG + AY+ PV+ S+ V W A+Y +NG++N++ LL Sbjct: 93 PLGLA-ILVNQKLRGITWFRMAYYTPVITSIVVAGIAWKALYA-SNGILNQILALLGFSD 150 Query: 146 RQNWLSSPTQSIIAIAFVNAWQFMGYQFSLLYAGVKAVPEDYFEAATIDGCGKWRAHWHV 205 WL+SP ++ ++ V W+ +GY + AG++A+P++ +EA IDG WR HW + Sbjct: 151 GIPWLTSPNLALWSVMVVTVWKGLGYYMVIYLAGLQAIPQELYEAGAIDGADGWRQHWDI 210 Query: 206 TLPLMRETYKFCFTIAITSGIGA---FVQMLIMTNGGPGTTNYTMTFMIYRYAFMESNYG 262 T+PLMR +CF + + S I A F ++ IMT GGP + T+ + +Y AF + Sbjct: 211 TIPLMR---PYCFLVGVLSSISALKVFEEVYIMTQGGPLNASKTVVYYVYERAFQDLEMN 267 Query: 263 YAC 265 YA Sbjct: 268 YAS 270 >TM0811 [G] COG1175 ABC-type sugar transport systems, permease components Length = 300 Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 126/238 (52%), Gaps = 4/238 (1%) Query: 28 YPVLQTVVRSFYDWDGLSTAAFSGIANYRELFNDPLLSTSLKNGLIFALVLAGFQIGLGT 87 YP++ + SFY +D + + + G+ NY +L DPL + KN L++ LV+ Q L + Sbjct: 34 YPLVFGIKISFYQYDIVGESLYIGLKNYVDLLRDPLFWNAFKNSLLYLLVVPPLQ--LIS 91 Query: 88 VLALVCANPRTRGRKLLKTAYFIPVVLSVTVVCQLWIAMYDPTNGLVNKLFELLNIPYRQ 147 +L V + RGR L +T F+PVV +T+ W MY G +N L + L+I Sbjct: 92 ILLAVLLDRAIRGRNLFRTLIFLPVVTPITIAAITWQWMYR-EKGFINFLLQSLHIIDEP 150 Query: 148 -NWLSSPTQSIIAIAFVNAWQFMGYQFSLLYAGVKAVPEDYFEAATIDGCGKWRAHWHVT 206 +LS P ++ AI FV W+ GY + AG++++P + EAA +DG + + VT Sbjct: 151 IAFLSDPKIALFAIMFVTMWKGFGYYMVIYLAGLQSIPRELIEAARVDGAKPSQVFFKVT 210 Query: 207 LPLMRETYKFCFTIAITSGIGAFVQMLIMTNGGPGTTNYTMTFMIYRYAFMESNYGYA 264 +PL++ FC T++ + + F ++ MT GGP TM IY AF +GY+ Sbjct: 211 IPLLKPYILFCSTMSSIAALNVFGEIYAMTKGGPVHATETMGIFIYNRAFEYLQFGYS 268 >PH1215 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 131/244 (53%), Gaps = 3/244 (1%) Query: 24 VILIYPVLQTVVRSFYDWDGL-STAAFSGIANYRELFNDPLLSTSLKNGLIFALVLAGFQ 82 + + + V+ + SF DW GL + F G+A Y++L +DP+ TSL+N L+ L+ Sbjct: 23 IFVYFAVVWNIYISFTDWRGLIPSYHFVGLAQYKQLIHDPIFWTSLRNNLLLILLFVPGS 82 Query: 83 IGLGTVLALVCANPRTRGRKLLKTAYFIPVVLSVTVVCQLWIAMYDPTNGLVNKLFELLN 142 + L + + + + R +T Y +P LS V LW MYDP++G++N LF+ L Sbjct: 83 LLL-GLFLAILLDMKVRFESGFRTIYVLPFALSFVVTATLWAWMYDPSSGVLNVLFDKLG 141 Query: 143 IPY-RQNWLSSPTQSIIAIAFVNAWQFMGYQFSLLYAGVKAVPEDYFEAATIDGCGKWRA 201 + + + W++ P ++ I WQF GY + AG++++P + +E A IDG W+ Sbjct: 142 LDFLKSGWITDPKIAMYCIIIALIWQFSGYTMIIYLAGIRSIPIEQYEGALIDGASTWQL 201 Query: 202 HWHVTLPLMRETYKFCFTIAITSGIGAFVQMLIMTNGGPGTTNYTMTFMIYRYAFMESNY 261 + ++ +P + + F + + + AF + ++T GGPGT+ + + +Y+ F ++N+ Sbjct: 202 YRYIVIPQLTKPTLSAFVVLMVFSLKAFDFIWVLTRGGPGTSTFILAIEMYKETFAKTNF 261 Query: 262 GYAC 265 Y Sbjct: 262 AYGA 265 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.140 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,519,585 Number of extensions: 794644 Number of successful extensions: 3427 Number of sequences better than 1.0e-05: 166 Number of HSP's gapped: 3230 Number of HSP's successfully gapped: 167 Length of query: 292 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 187 Effective length of database: 26,268,361 Effective search space: 4912183507 Effective search space used: 4912183507 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)