BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0051.p (478 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin1661 [E] COG0624 Acetylornithine deacetylase/Succinyl-diamino... 181 3e-45 BS_ytjP [E] COG0624 Acetylornithine deacetylase/Succinyl-diamino... 160 3e-39 L59867 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminop... 159 7e-39 SA1572 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminop... 152 9e-37 SPy1070 [E] COG0624 Acetylornithine deacetylase/Succinyl-diamino... 144 2e-34 >lin1661 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 181 bits (458), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 0/469 (0%), Positives = 0/469 (0%), Gaps = 34/469 (7%) Query: 17 LEANQENMIEDAKGLIRIRSVGLDYQPGSTQPFGEGCRTVLDEAIRLMQREKLEVTDFDG 76 + + + + + T E R + + + Sbjct: 10 IVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTI 69 Query: 77 YGVKGALAASE-RGSIGFFAHLDVVPEGEGWSFPPYDPFVWDGFLWGRGAMDNXXXXXXX 135 E + Sbjct: 70 --AVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 127 Query: 136 XXXXXXXXESRLPLRHGLYLFLGCNEENGMRDIRHFLSRHEPPLFGIVPDAYFPLCFAEK 195 L + ++ R +P + + Sbjct: 128 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDI 187 Query: 196 GMLRADF---EGEA---ADGNLLAFNGGTEYNVVPAAASAILRDV-DPDHARQVL----- 243 A+ Sbjct: 188 RESVAELAYYREHFIKL 247 Query: 244 --PGSFTVEVLPEGVRITASGKAGHAAFPEGTDNXXXXXXXXXXXHGLVRGSRTLRALAF 301 Sbjct: 248 -- 305 Query: 302 VQE-CFANPYGHGLGIAFRDV-SGETTVNAAV----QMENGRLRLLCDIRYGVTQEIGGI 355 Sbjct: 306 -- 363 Query: 356 QQLLEEAANRYGMQLTRTEDSPPHYIAPDDPIAAALCDLANRELGTSQPPYAMGGITHAR 415 Sbjct: 364 423 Query: 416 WLPRAAAFGPLRRDKPSPFPAGRGSGHQPDEAMNLEAVWDAFLIYVKAV 464 Sbjct: 424 ------- 465 >BS_ytjP [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 160 bits (406), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 0/472 (0%), Positives = 0/472 (0%), Gaps = 50/472 (10%) Query: 20 NQENMIEDAKGLIRIRSVGLDYQPGSTQPFGEGCRTVLDEAIRLMQREKLEVTDFDGYGV 79 + + + + + G I + + +G Sbjct: 10 IVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPT- 68 Query: 80 KGALAASERGSI-GFFAHLDVVPEGEGWSFPPYDPFVWDGFLWGRGAMDNXXXXXXXXXX 138 A+ S+ ++ Sbjct: 69 -IAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 127 Query: 139 XXXXXESRLPLRHGLYLFLGCNEENGMRDIRHFLSRHEPPLFGIVPDAYFPLCFAEKGML 198 L D+ I+ + Sbjct: 128 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDI 187 Query: 199 RADF------EGEAADGNLLAFNGGTEYNVVPAAASAI----------------LRDVDP 236 R Sbjct: 188 RESVAELAYY 247 Query: 237 DHARQVLPGSFTVEVLPEGVRITASGKAGHAAFPEGTDNXXXXXXXXXXXHGLVRGSRTL 296 Sbjct: 248 ----------- 296 Query: 297 RALAFVQECFA-NPYGHGLGIAFRD-VSGETTVNA-AVQMENGR-LRLLCDIRYGVTQEI 352 Sbjct: 297 356 Query: 353 GGIQQLLEEAANRYGMQLTRTEDSPPHYIAPDDPIAAALCDLANRELGTSQPPYAMGGIT 412 Sbjct: 357 --- 413 Query: 413 HARWLPRAAAFGPLRRDKPSPFPAGRGSGHQPDEAMNLEAVWDAFLIYVKAV 464 Sbjct: 414 ------- 458 >L59867 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 159 bits (403), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 0/470 (0%), Positives = 0/470 (0%), Gaps = 34/470 (7%) Query: 17 LEANQENMIEDAKGLIRIRSVGLDYQPGSTQPFGEGCRTVLDEAIRLMQREKLEVTDFDG 76 + + + + + T E R + + + Sbjct: 10 IVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTI 69 Query: 77 YGVKGAL---AASERGSIGFFAHLDVVPEGEGWSFPPYDPFVWDGFLWGRGAMDNXXXXX 133 + + A V FL Sbjct: 70 AVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICG 129 Query: 134 XXXXXXXXXXESRLPLRHGLYLFLGCNEENGMRDIRHFLSRHEPPL--FGIVPDAYFPLC 191 +P + + + R + G Sbjct: 130 NSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIRE 189 Query: 192 FAEKGMLRA--DFEGEAADGNLL--AFNGGTEYNVVPAAASAIL---RDVD-------PD 237 + Sbjct: 190 SVAELAYYREH- 248 Query: 238 HARQVLPGSFTVEVLPEGVRITASGKAGHAAFPEGTDNXXXXXXXXXXXHGLVRGSRTLR 297 Sbjct: 249 -- 306 Query: 298 ALAFVQECFANPYGHGLGIAFRD-VSGETTVNAAVQM--ENGRLRLLCDIRYGVTQEIGG 354 Sbjct: 307 - 365 Query: 355 IQQLLEEAANRYGMQLTRTEDSPPHYIAPDDPIAAALCDLANRELGTSQPPYAMGGITHA 414 Sbjct: 366 - 424 Query: 415 RWLPRAAAFGPLRRDKPSPFPAGRGSGHQPDEAMNLEAVWDAFLIYVKAV 464 Sbjct: 425 ------- 467 >SA1572 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 152 bits (385), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 0/473 (0%), Positives = 0/473 (0%), Gaps = 35/473 (7%) Query: 14 SEFLEANQENMIEDAKGLIRIRSVGLDYQPGSTQPFGEGCRTVLDEAIRLMQREKLEVTD 73 + + + + S + + Sbjct: 3 KTSMIHAIVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNI 62 Query: 74 FDGYGVKGALAASERGSI-GFFAHLDVVPEGEGWSFPPYDPFVWDGFLWGRGAMDNXXXX 132 + G + D Sbjct: 63 LAE--GPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWV 120 Query: 133 XXXXXXXXXXXESRLPLRHGLYLFLGCNEENGMRDIRHFLSRHEPPLFGIVPDAYFPLCF 192 + Y+ + L + D + Sbjct: 121 PAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGT 180 Query: 193 AEKGMLRADF-------EGEAADGNLLAFNGGTEYNVVPAAASA----------ILRDVD 235 + + Sbjct: 181 HQAMDDIRESVAELAYY 240 Query: 236 PDHARQVLPGSFTVEVLPEGVRI-TASGKAGHAAFPEGTDNXXXXXXXXXXXHGLVRGSR 294 Sbjct: 241 --- 297 Query: 295 TLRALAFVQECFANPYGHGLGIAFR-DVSGETTVNAAV-QMENGRLRLL-CDIRYGVTQE 351 Sbjct: 298 - 356 Query: 352 IGGIQQLLEEAANRYGMQLTRTEDSPPHYIAPDDPIAAALCDLANRELGTSQPPYAMGGI 411 Sbjct: 357 416 Query: 412 THARWLPRAAAFGPLRRDKPSPFPAGRGSGHQPDEAMNLEAVWDAFLIYVKAV 464 Sbjct: 417 ------- 462 >SPy1070 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 0/470 (0%), Positives = 0/470 (0%), Gaps = 37/470 (7%) Query: 17 LEANQENMIEDAKGLIRIRSVGLDYQPGSTQPFGEGCRTVLDEAIRLMQREKLEVTDFDG 76 + + + + + T E R + + + Sbjct: 10 IVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTI 69 Query: 77 YGVKGALAASERGSIGFFAHLDVVPEGEGWSFPPYDPFVWDGFLWGRGAMDNXXXXXXXX 136 + + E + Sbjct: 70 AVHQSDEQLALM-DDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPIC 128 Query: 137 XXXXXXXESRLPLRHGLYLFLGCNEENGMRDIRHFLSRH--EPPLFGIVPDAYFPLCFAE 194 L + ++ R E + + Sbjct: 129 GNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIR 188 Query: 195 KGMLRA--DFEGEAADGNLLA-FNGGTEYNVVPAAASAILRDVDPDHARQVLPGSFTVEV 251 + + Sbjct: 189 ESVAELAY--- 245 Query: 252 LPEGVR-----------ITASGKAGHAAFPEGTDNXXXXXXXXXXXHGLVRGSRTLRALA 300 Sbjct: 246 305 Query: 301 --FVQECFANPYGHGLGIAFRDVS-GETTVNAAV---QMENGRLRLLCDIRYGVTQEIGG 354 Sbjct: 306 --- 362 Query: 355 IQQLLEEAANRYGMQLTRTEDSPPHYIAPDDPIAAALCDLANRELGTSQPPYAMGGITHA 414 Sbjct: 363 - 421 Query: 415 RWLPRAAAFGPLRRDKPSPFPAGRGSGHQPDEAMNLEAVWDAFLIYVKAV 464 Sbjct: 422 ------- 464 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.139 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 36,159,577 Number of extensions: 1580190 Number of successful extensions: 3331 Number of sequences better than 1.0e-05: 17 Number of HSP's gapped: 3314 Number of HSP's successfully gapped: 19 Length of query: 478 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 368 Effective length of database: 25,691,691 Effective search space: 9454542288 Effective search space used: 9454542288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 118 (50.1 bits)