BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0047.p (277 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO1071 [P] COG1464 ABC-type metal ion transport system, peripla... 115 1e-25 Cj1200 [P] COG1464 ABC-type metal ion transport system, periplas... 113 3e-25 yaeC [P] COG1464 ABC-type metal ion transport system, periplasmi... 113 3e-25 ZyaeC [P] COG1464 ABC-type metal ion transport system, periplasm... 113 3e-25 >YPO1071 [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen Length = 432 Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 19/261 (7%), Positives = 42/261 (16%), Gaps = 29/261 (11%) Query: 22 GCSKSASGGQSKHIVIGVIAREQPDIDYVAEKLKTE--GYDIEVKVFNDNIALNNATSEG 79 ++A S+ + + R + ++ N Sbjct: 22 DSIETAVK--SELVNVAKKVRIDGFRKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAI 79 Query: 80 EIDANYFQNEKYLNSFNQSNGTDLITYGPNIYTTPVVFVSKKHKSVDSLPEGAKIGIAND 139 + G D P V + P D Sbjct: 80 IKEKINPAGAPTYVPGEYKLGEDFTYSV-EFEVYPEVELQGLEAIEVEKPIVEVTDADVD 138 Query: 140 SANRARELQLLAANGFIKLREGVE-LPTLLDITENKKKLNFVEID----PRS---RVGAF 191 Q E + + + + ++ + + F Sbjct: 139 GMLDTLRKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGRMIPGF 198 Query: 192 ADLDAMTAPSITVYQMKDPEVTIDTALFQETPEVYKQYGGIVLAI--NKDTEDQNKEWLD 249 D + E G K E+ + Sbjct: 199 EDGIKGHKAGEEFTIDVT-------FPEEYHAE--NLKGKAAKFAINLKKVEE-----RE 244 Query: 250 KVVNILSSKEYADWLLKTYSG 270 + + G Sbjct: 245 LPELTAEFIKRFGVEDGSVEG 265 >Cj1200 [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen Length = 432 Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 11/229 (4%), Positives = 34/229 (14%), Gaps = 12/229 (5%) Query: 47 IDYVAEKLKTEGYDIEVKVFNDNIALNNATSEGEIDANYFQNEKYLNSFNQSNGTDLITY 106 + ++ + + + L Sbjct: 43 GFRKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLGED 102 Query: 107 GPNIYTTPVVFVSKKHKSVDSLPEGAKIGIANDSANRARELQLLAANGFIKLREGVELPT 166 V+ + + +++ E K + A+ L L + Sbjct: 103 F-TYSVEFEVYPEVELQGLEA-IEVEKPIVEVTDADVDGMLDTLRKQQATWKEKD-GAVE 159 Query: 167 LLDITENKKKLNFVEIDPRSRVGAFADLD-AMTAPSITVYQMKDPEVTIDTALFQETPEV 225 D + + + L Sbjct: 160 AEDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGRMIPGFEDGIKG---HKAGEEFTID-- 214 Query: 226 YKQYGGIVLAINKDTEDQNKEWLDKVVNILSSKEYADWLLKTYSGVKKP 274 A N + + + + + Sbjct: 215 VTFPEEYH-AENLKGKAAKF--AINLKKVEERELPELTAEFIKRFGVED 260 >yaeC [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen Length = 432 Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 12/172 (6%), Positives = 30/172 (17%), Gaps = 10/172 (5%) Query: 22 GCSKSASGGQSKHIVIGVIAREQPDIDYVAEKLKTE--GYDIEVKVFNDNIALNNATSEG 79 ++A +S+ + + R + ++ N Sbjct: 22 DSIETAV--KSELVNVAKKVRIDGFRKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAI 79 Query: 80 EIDANYFQNEKYLNSFNQSNGTDLITYGPNIYTTPVVFVSKKHKSVDSLPEGAKIGIAND 139 + G D P V + P D Sbjct: 80 IKEKINPAGAPTYVPGEYKLGEDFTYSV-EFEVYPEVELQGLEAIEVEKPIVEVTDADVD 138 Query: 140 SANRARELQLLAANGFIKLREGVE-LPTLLDITENKKKLNFVEID----PRS 186 Q E + + + + ++ + Sbjct: 139 GMLDTLRKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMG 190 >ZyaeC [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen Length = 432 Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 12/172 (6%), Positives = 30/172 (17%), Gaps = 10/172 (5%) Query: 22 GCSKSASGGQSKHIVIGVIAREQPDIDYVAEKLKTE--GYDIEVKVFNDNIALNNATSEG 79 ++A +S+ + + R + ++ N Sbjct: 22 DSIETAV--KSELVNVAKKVRIDGFRKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAI 79 Query: 80 EIDANYFQNEKYLNSFNQSNGTDLITYGPNIYTTPVVFVSKKHKSVDSLPEGAKIGIAND 139 + G D P V + P D Sbjct: 80 IKEKINPAGAPTYVPGEYKLGEDFTYSV-EFEVYPEVELQGLEAIEVEKPIVEVTDADVD 138 Query: 140 SANRARELQLLAANGFIKLREGVE-LPTLLDITENKKKLNFVEID----PRS 186 Q E + + + + ++ + Sbjct: 139 GMLDTLRKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMG 190 Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 12/172 (6%), Positives = 30/172 (17%), Gaps = 10/172 (5%) Query: 22 GCSKSASGGQSKHIVIGVIAREQPDIDYVAEKLKTE--GYDIEVKVFNDNIALNNATSEG 79 ++A +S+ + + R + ++ N Sbjct: 22 DSIETAV--KSELVNVAKKVRIDGFRKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAI 79 Query: 80 EIDANYFQNEKYLNSFNQSNGTDLITYGPNIYTTPVVFVSKKHKSVDSLPEGAKIGIAND 139 + G D P V + P D Sbjct: 80 IKEKINPAGAPTYVPGEYKLGEDFTYSV-EFEVYPEVELQGLEAIEVEKPIVEVTDADVD 138 Query: 140 SANRARELQLLAANGFIKLREGVE-LPTLLDITENKKKLNFVEID----PRS 186 Q E + + + + ++ + Sbjct: 139 GMLDTLRKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMG 190 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.312 0.131 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,053,837 Number of extensions: 908333 Number of successful extensions: 1721 Number of sequences better than 1.0e-05: 35 Number of HSP's gapped: 1649 Number of HSP's successfully gapped: 36 Length of query: 277 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 172 Effective length of database: 26,268,361 Effective search space: 4518158092 Effective search space used: 4518158092 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 115 (48.9 bits)