BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0045.p (317 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA5503 [P] COG1135 ABC-type metal ion transport system, ATPase c... 239 6e-63 YPO1073 [P] COG1135 ABC-type metal ion transport system, ATPase ... 230 2e-60 STM0247 [P] COG1135 ABC-type metal ion transport system, ATPase ... 230 2e-60 HI0621.1 [E] COG0241 Histidinol phosphatase and related phosphat... 225 6e-59 SA0420 [P] COG1135 ABC-type metal ion transport system, ATPase c... 224 1e-58 >PA5503 [P] COG1135 ABC-type metal ion transport system, ATPase component Length = 335 Score = 239 bits (609), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 138/330 (41%), Positives = 186/330 (56%), Gaps = 17/330 (5%) Query: 1 MIEIKELYKSFG----DKPVLSGINVTIGDGDIYGLVGISGAGKSTLLRCINGLETFERG 56 MIE +++K++ + P L + I G I+GL+G SGAGKSTLLR IN LE G Sbjct: 1 MIEFHDVHKTYRVAGREIPALQPTRLNIQAGQIFGLIGHSGAGKSTLLRLINRLEEPSGG 60 Query: 57 TLRVNGTDISSLHGAELRKFRSGIGMIFQQFSLLERKTVYENIMFPMKCYN-YKKAEADA 115 + V G D+++L LR+FR +GMIFQ F+LL KTV +NI P++ + +AE DA Sbjct: 61 RILVEGEDVTALDAEGLRRFRQRVGMIFQHFNLLSSKTVADNIAMPLRLAGGFSRAEVDA 120 Query: 116 RIHELLRLVELTDKIRSRPSQLSGGQKQRVAIARALAMNPKILLCDEATSALDPNITKSI 175 R+ ELL V L+D R P+QLSGGQKQRV IARALA P ILLCDEATSALDP T S+ Sbjct: 121 RVSELLARVGLSDHARKYPAQLSGGQKQRVGIARALACRPSILLCDEATSALDPQTTASV 180 Query: 176 LALLKKINRELGITIVIVTHQMEVVKEVCTDMALLSKGELQISGSVQDIFLGRSETLAEL 235 L LL +INREL +TIV++TH+M+V++ VC +A++ G + G V D+FL Sbjct: 181 LQLLAEINRELKLTIVLITHEMDVIRRVCDQVAVMDGGAIVEQGDVADVFLHPQHPTTRR 240 Query: 236 LGSAGMGQQGDKVVFEMVQRPG------------QNDLLSRFATATGIRFEVVWGGLDRY 283 D+ + PG LL A TG+ + ++ G +DR Sbjct: 241 FVFEAERVDEDERHDDFAHVPGLILRLTFRGEATYAPLLGTVARQTGVDYSILSGRIDRI 300 Query: 284 ADSIAGAFTLAVDKDDFPKAQAFLEDTDTE 313 D+ G TLA+ D A + L D Sbjct: 301 KDTPYGQLTLALVGGDLEAAMSQLNAADVH 330 >YPO1073 [P] COG1135 ABC-type metal ion transport system, ATPase component Length = 343 Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 120/238 (50%), Positives = 166/238 (69%), Gaps = 4/238 (1%) Query: 1 MIEIKELYKSF--GDKPV--LSGINVTIGDGDIYGLVGISGAGKSTLLRCINGLETFERG 56 MI++ + K F G + + LS +++ + G IYG++G SGAGKSTL+RC N LE G Sbjct: 1 MIKLTHISKVFQQGSRTITALSDVSLHVPAGQIYGVIGASGAGKSTLIRCANMLERPTSG 60 Query: 57 TLRVNGTDISSLHGAELRKFRSGIGMIFQQFSLLERKTVYENIMFPMKCYNYKKAEADAR 116 + V+ D+++L +L + R IGMIFQ F+LL +TVY NI P++ N +A+ R Sbjct: 61 QVLVDDQDLTTLSEGQLTRARRQIGMIFQHFNLLSSRTVYGNIALPLELDNTSRADIKKR 120 Query: 117 IHELLRLVELTDKIRSRPSQLSGGQKQRVAIARALAMNPKILLCDEATSALDPNITKSIL 176 ++ELL LV LTDK + P+ LSGGQKQRVAIARALA NPK+LLCDEATSALDP T+SIL Sbjct: 121 VNELLDLVGLTDKQDAYPANLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180 Query: 177 ALLKKINRELGITIVIVTHQMEVVKEVCTDMALLSKGELQISGSVQDIFLGRSETLAE 234 LLK INR LG+TI+++TH+M+VVK +C +A++S+G+L SV ++F LA+ Sbjct: 181 ELLKDINRRLGLTILLITHEMDVVKRICDQVAVISEGKLIEKDSVSEVFSHPKTPLAQ 238 >STM0247 [P] COG1135 ABC-type metal ion transport system, ATPase component Length = 343 Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 120/238 (50%), Positives = 166/238 (69%), Gaps = 4/238 (1%) Query: 1 MIEIKELYKSF--GDKPV--LSGINVTIGDGDIYGLVGISGAGKSTLLRCINGLETFERG 56 MI++ + K F G + + L+ +++ + G IYG++G SGAGKSTL+RC+N LE G Sbjct: 1 MIKLSNITKVFQQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60 Query: 57 TLRVNGTDISSLHGAELRKFRSGIGMIFQQFSLLERKTVYENIMFPMKCYNYKKAEADAR 116 +++V G ++++L +EL K R IGMIFQ F+LL +TV+ N+ P++ N K E R Sbjct: 61 SVQVGGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKEEIKRR 120 Query: 117 IHELLRLVELTDKIRSRPSQLSGGQKQRVAIARALAMNPKILLCDEATSALDPNITKSIL 176 + ELL LV L DK S P+ LSGGQKQRVAIARALA NPK+LLCDEATSALDP T+SIL Sbjct: 121 VTELLDLVGLGDKHDSYPANLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180 Query: 177 ALLKKINRELGITIVIVTHQMEVVKEVCTDMALLSKGELQISGSVQDIFLGRSETLAE 234 LLK INR LG+TI+++TH+M+VVK +C +A++S GEL +V ++F LA+ Sbjct: 181 ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 238 >HI0621.1 [E] COG0241 Histidinol phosphatase and related phosphatases Length = 346 Score = 225 bits (574), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 24/316 (7%), Positives = 66/316 (20%), Gaps = 22/316 (6%) Query: 17 LSGINVTIGDGDIYGLVGISGAGKSTLLRCINGLETFERGTLRVNGTDISSLHGAELRKF 76 ++ L G + + T + T + + + Sbjct: 21 MTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSRE 80 Query: 77 RSGIGMIFQQFSLLERKTVYENIMFPMKCYNYKKAEADARIHELLRLVELTDKIRSRPSQ 136 + I S K + + K ++ R+ + + + Sbjct: 81 KLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNC 140 Query: 137 LSGGQKQRVAIARALAMNPKILLCDEATSALDPNITKSILALLKKINRELGITIVIVTHQ 196 A A+++ + E A + R L + + Sbjct: 141 FGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPR 200 Query: 197 MEVVKEVCTDMALLSKGELQISGSVQDIFLGRSETLAE------------------LLGS 238 + ++ + + + L + + L L L S Sbjct: 201 IVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFS 260 Query: 239 AGMGQQGDKVVFEMVQRPGQNDLLSRFATATGIRFEVVWGGLDRYADSIAGAFTLAV--- 295 G++ + + F + A Sbjct: 261 RFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVA-STLLGATTMDQLKTNI 319 Query: 296 DKDDFPKAQAFLEDTD 311 + ++ L + + Sbjct: 320 ESLHLELSEDVLAEIE 335 >SA0420 [P] COG1135 ABC-type metal ion transport system, ATPase component Length = 341 Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 111/238 (46%), Positives = 159/238 (66%), Gaps = 4/238 (1%) Query: 1 MIEIKELYKSFGDKP----VLSGINVTIGDGDIYGLVGISGAGKSTLLRCINGLETFERG 56 MIE +++ KSF K L ++ T+ DI+G++G SGAGKSTL+R +N LE G Sbjct: 1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNRNDIFGVIGYSGAGKSTLVRLVNHLEAASNG 60 Query: 57 TLRVNGTDISSLHGAELRKFRSGIGMIFQQFSLLERKTVYENIMFPMKCYNYKKAEADAR 116 + V+G DI++ +R+ + IGMIFQ F+LL TV++N+ P+ K E R Sbjct: 61 QVIVDGHDITNYSEKGMREIKKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQR 120 Query: 117 IHELLRLVELTDKIRSRPSQLSGGQKQRVAIARALAMNPKILLCDEATSALDPNITKSIL 176 + E+L V L+DK P +LSGGQKQRVAIARAL NPKILLCDEATSALDP T SIL Sbjct: 121 VTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASIL 180 Query: 177 ALLKKINRELGITIVIVTHQMEVVKEVCTDMALLSKGELQISGSVQDIFLGRSETLAE 234 LLK +N+ GITI+++TH+M V+K++C +A++ KG++ +G+V+++F T+A+ Sbjct: 181 TLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQ 238 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.138 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,206,212 Number of extensions: 1020075 Number of successful extensions: 7861 Number of sequences better than 1.0e-05: 2195 Number of HSP's gapped: 4816 Number of HSP's successfully gapped: 2427 Length of query: 317 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 211 Effective length of database: 26,153,027 Effective search space: 5518288697 Effective search space used: 5518288697 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)