BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0042.p (226 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SA1323 [TK] COG0745 Response regulators consisting of a CheY-lik... 185 5e-47 BS_resD [TK] COG0745 Response regulators consisting of a CheY-li... 181 8e-46 CAC0564 [TK] COG0745 Response regulators consisting of a CheY-li... 180 2e-45 lin2644 [TK] COG0745 Response regulators consisting of a CheY-li... 179 2e-45 BS_yclJ [TK] COG0745 Response regulators consisting of a CheY-li... 175 5e-44 >SA1323 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 241 Score = 185 bits (470), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 92/235 (39%), Positives = 147/235 (62%), Gaps = 13/235 (5%) Query: 3 KILIVDDDPHIRALMRLYLKNEGFDLAEADNGIDAHAIVKGSGIDLVILDIMMPHMDGWE 62 +ILIVDD+ IR L+++YL+ E F++ EA NG +A+ + + ++LD+M+P MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 63 LCQAIRISDPDIPLLMVTAKGESAQKIKGFQLGTDDYMTKPFDPVELVMRVKALLRRSRI 122 + +R P++M+TAKGE +++GF+ G DDY+ KPF P E+V+RVKALLRR++ Sbjct: 64 VATKLR-EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122 Query: 123 ASSQ--------VIALGEIVLNRKTYKVMRGDEELTLPLKEFELLFVLAGHPGQIFTREQ 174 + + VI + ++ ++V+ ++E+ L KE+ELL LA P ++F REQ Sbjct: 123 TTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQ 182 Query: 175 LITQIWGMDYEGDDRTVDVHIKRLRE---RFAGDVRHFRIETARSVGYRLAVNPG 226 L+ ++W ++ GD RTVD H+KRLRE R + + H I+T VGY+ V Sbjct: 183 LLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHM-IQTVWGVGYKFEVKSN 236 >BS_resD [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 240 Score = 181 bits (459), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 95/232 (40%), Positives = 144/232 (62%), Gaps = 11/232 (4%) Query: 2 VKILIVDDDPHIRALMRLYLKNEGFDLAEADNGIDAHAIVKGSGIDLVILDIMMPHMDGW 61 KIL+VDD+ IR L+R+YL+ E + + EA+NG +A A + DL++LD+MMP DG Sbjct: 7 TKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGI 66 Query: 62 ELCQAIRISDPDIPLLMVTAKGESAQKIKGFQLGTDDYMTKPFDPVELVMRVKALLRRSR 121 E+C+ IR P++M+TAKGE A +++GF+ GTDDY+ KPF P E+V+RVKALLRR+ Sbjct: 67 EVCRQIR-EKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRAS 125 Query: 122 IAS--------SQVIALGEIVLNRKTYKVMRGDEELTLPLKEFELLFVLAGHPGQIFTRE 173 S V+ + ++ ++V E++L K +ELL+ LA P +++ RE Sbjct: 126 QTSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKVYELLYFLAKTPDKVYDRE 185 Query: 174 QLITQIWGMDYEGDDRTVDVHIKRLRERF--AGDVRHFRIETARSVGYRLAV 223 +L+ ++W ++ GD RTVD H+KRLRE+ +I T VGY+ V Sbjct: 186 KLLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237 >CAC0564 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 233 Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 148/228 (64%), Gaps = 8/228 (3%) Query: 4 ILIVDDDPHIRALMRLYLKNEGFDLAEADNGIDAHAIVKGSGIDLVILDIMMPHMDGWEL 63 +L+VDD+ IR L+ +YL NEGF++ +A+NG++A I+K + + LV+LDIMMP MDG Sbjct: 6 VLVVDDEKEIRDLIGIYLNNEGFNVIKAENGVEALEILKDTEVQLVLLDIMMPKMDGITT 65 Query: 64 CQAIRISDPDIPLLMVTAKGESAQKIKGFQLGTDDYMTKPFDPVELVMRVKALLRR---- 119 C IR D + P++M++AKGE KI G G DDY++KPF+P+EL+ RVK+ +RR Sbjct: 66 CMKIR-EDKNTPIIMLSAKGEDMDKILGLTTGADDYISKPFNPLELIARVKSQIRRYTKL 124 Query: 120 --SRIASSQVIALGEIVLNRKTYKVMRGDEELTLPLKEFELLFVLAGHPGQIFTREQLIT 177 + ++S I +GEI +N T++V GD ++L +EF++L +L+ + G +F+ E++ Sbjct: 125 NSTYESNSANIEVGEITINTDTHEVKIGDRTVSLTKREFDILVLLSRNKGVVFSTEKIYE 184 Query: 178 QIWGMDYEGDDRTVDVHIKRLRERFAGDVRHFR-IETARSVGYRLAVN 224 +W ++ TV VHI+++RE+ + R I+T VGY++ N Sbjct: 185 SVWHEEFYDCHNTVMVHIRKIREKIEKNPRKPEYIKTVWGVGYKIEKN 232 >lin2644 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 236 Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 93/232 (40%), Positives = 142/232 (61%), Gaps = 11/232 (4%) Query: 1 MVKILIVDDDPHIRALMRLYLKNEGFDLAEADNGIDAHAIVKGSGIDLVILDIMMPHMDG 60 MVKIL+VDD+ I L++ ++ GFD+ A++G + + DL++LD+M+P MDG Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDG 60 Query: 61 WELCQAIRISDPDIPLLMVTAKGESAQKIKGFQLGTDDYMTKPFDPVELVMRVKALLRRS 120 E+ + +R +P+LM+TAK E KI G +LG DDYMTKPF P E+V R+KA+LRR+ Sbjct: 61 IEVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRT 120 Query: 121 RIA----------SSQVIALGEIVLNRKTYKVMRGDEELTLPLKEFELLFVLAGHPGQIF 170 + I +G++ + +Y+V D+ L L KEFELL LA H G++F Sbjct: 121 EGKAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVF 180 Query: 171 TREQLITQIWGMDYEGDDRTVDVHIKRLRERFAGDVRHFR-IETARSVGYRL 221 +R+QL+ +W DY G+ R VDVH+ LR++ D + + I+T R GY++ Sbjct: 181 SRDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM 232 >BS_yclJ [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 227 Score = 175 bits (443), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 143/226 (63%), Gaps = 8/226 (3%) Query: 2 VKILIVDDDPHIRALMRLYLKNEGFDLAEADNGIDAHAIVKGSGIDLVILDIMMPHMDGW 61 +KIL+++D+ + + ++ EGF+ +G++ + DL+ILDIM+P MDG Sbjct: 1 MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60 Query: 62 ELCQAIRISDPDIPLLMVTAKGESAQKIKGFQLGTDDYMTKPFDPVELVMRVKALLRRSR 121 +C+ IR + +P++M+TAK + ++ GF++G DDY+TKPF P+ LV R+KA++RR + Sbjct: 61 TICRKIRETST-VPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK 119 Query: 122 IASSQVIALGEI-----VLNRKTYKVMRGDEEL-TLPLKEFELLFVLAGHPGQIFTREQL 175 VI I +N+KT +V+ E + L KEF+LL+ L +P Q+F+REQL Sbjct: 120 ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 179 Query: 176 ITQIWGMDYEGDDRTVDVHIKRLRERFAGDVRHFRIETARSVGYRL 221 + Q+WG + GD+RTVDVHIKRLR++ A + + F + T VGY+ Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKLASEDKPF-LYTVWGVGYKF 224 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.324 0.142 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,881,621 Number of extensions: 686871 Number of successful extensions: 3070 Number of sequences better than 1.0e-05: 543 Number of HSP's gapped: 2579 Number of HSP's successfully gapped: 545 Length of query: 226 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 123 Effective length of database: 26,499,029 Effective search space: 3259380567 Effective search space used: 3259380567 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 114 (48.5 bits)