BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0342.0037.p
         (167 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0756 [R] COG0655 Multimeric flavodoxin WrbA                         86   3e-17

>CAC0756 [R] COG0655 Multimeric flavodoxin WrbA
          Length = 180

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 63/115 (54%)

Query: 31  GTIRHCTGCYGCWVRTPGVCVLKDGYHNIGELFSKCDELMIISKCVYGSYSPFILNVLDR 90
            + +HC GC+ CW++TPG CVLKD    + + +   D ++ ++  ++G YS  I  ++DR
Sbjct: 42  NSFKHCIGCFSCWIKTPGKCVLKDSMSEVNKSYINSDIVIYLTPIIFGQYSANIKTIIDR 101

Query: 91  SISYVLPYFSTQSGETHHRKRYDHQFALSVHFYGEGLTEAEIETAKKLVAANSAN 145
           +  Y LP+F   +G   H  RY+      +  YG+ +T+ E  T + L+  +  N
Sbjct: 102 AQPYCLPFFKVINGVIKHPLRYEKNPKEIIVAYGDDVTKEEKSTFQDLIDNHGRN 156


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 12,467,389
Number of extensions: 499172
Number of successful extensions: 1643
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1644
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 38,378,431
Length adjustment: 99
Effective length of query: 68
Effective length of database: 26,960,365
Effective search space: 1833304820
Effective search space used: 1833304820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)