BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0342.0036.p
         (202 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN1034 [K] COG1309 Transcriptional regulator                          126   2e-29
aq_2179 [K] COG1309 Transcriptional regulator                          55   8e-08

>FN1034 [K] COG1309 Transcriptional regulator
          Length = 205

 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 100/178 (56%), Gaps = 1/178 (0%)

Query: 10  EKPYHHGNLRKQLIETGISLINEEGVKSFSLRRVAAQCNVSHTAPYSHFKNVDELIAAMG 69
           EK YHHGNL+++LI+ GI LINE G    SLR++A  C VS++APY+HFK+ DEL+  M 
Sbjct: 9   EKSYHHGNLKEELIKKGIELINEVGENKLSLRKLAIICGVSNSAPYTHFKSKDELLKGMS 68

Query: 70  EHVTEQFMERLRISIMGEEDSREAISLLGQAYVDFFIENPQYFQFLYYHSGIIIDLD-NY 128
            ++       L  +    ++    + +LG+ YV FF++NP+Y+ FL     I IDL    
Sbjct: 69  LYILNLLKLELENTRKKYKNKENLLVMLGKTYVIFFLKNPKYYYFLSSRKDIEIDLSIKI 128

Query: 129 SSDNYPPFALFRTTAFHMFRSTGLPEASYSHQLIVLWSMVHGIASLLTNNGVRYSGNW 186
            ++N     + +  A + F   G+      ++++ +WS+V G+ +++      Y  NW
Sbjct: 129 DNNNMTALDILKEEAINKFSKLGISNEDIQNKILAMWSLVAGLIAVINMTSKNYLENW 186


>aq_2179 [K] COG1309 Transcriptional regulator
          Length = 666

 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 7/106 (6%), Positives = 18/106 (16%), Gaps = 1/106 (0%)

Query: 14  HHGNLRKQLIETGISLINEEGVKSFSLRRVAAQCNVSHTAPYSHFKNVDELIAAMGEHVT 73
             G       +  +    E       + +                    E  +     ++
Sbjct: 10  GVGCGLYINEKGKVKGDFEHPANLGDICKKPLYLPKVLNRGRIAKPMYRENKSHSFREIS 69

Query: 74  EQFMERLRISIMGEEDSREAISLLGQAYVDFFIENPQYFQFL-YYH 118
            +    +    +      E    L    +   I     F       
Sbjct: 70  WEEAYEILKEKLISFSPDETYFYLSGQLLTEDIYVANKFVKGFLRT 115


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,881,942
Number of extensions: 554922
Number of successful extensions: 1059
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1060
Number of HSP's successfully gapped: 4
Length of query: 202
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 101
Effective length of database: 26,729,697
Effective search space: 2699699397
Effective search space used: 2699699397
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)