BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0014.p (291 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2712 [K] COG0583 Transcriptional regulator 255 5e-68 sll0030 [K] COG0583 Transcriptional regulator 108 1e-23 all4986 [K] COG0583 Transcriptional regulator 103 3e-22 all0862 [K] COG0583 Transcriptional regulator 103 3e-22 STM0256 [K] COG0583 Transcriptional regulator 101 1e-21 >BH2712 [K] COG0583 Transcriptional regulator Length = 296 Score = 255 bits (652), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 129/286 (45%), Positives = 186/286 (65%) Query: 3 NFELYKVFYWAAKTGSLTQAAKSLYITQPSVSHAIKQLEDSFGLTLFTRNSKGVVLTPEG 62 N ELY+VFY A S ++AA LYITQPSVSHAIKQLE+ + LFTR++KGV LT EG Sbjct: 2 NLELYRVFYVTATEKSFSKAAAKLYITQPSVSHAIKQLEEMLEVQLFTRHAKGVELTKEG 61 Query: 63 ATLYSYIEQSHILITQAEKKMAELKNLDNGELRIGGSDSLFKHYLLPFIEVFHQRYPGIR 122 +Y I+Q+ I QAE+ + ELK L+ G + IGGSDS FK+++LP I+ F RYP I Sbjct: 62 EAIYPSIQQALGSINQAEQLLQELKQLEGGRVTIGGSDSTFKYFVLPSIQRFQARYPNIH 121 Query: 123 LHLIHGTTPEVISYLKEGLVDLGVVRMPITDPQLEVRQGLQLQDCFIAGSHYAGLNQKVL 182 + L HG+TP++I L G +D G V +P+ + +E++ L + F+ G L ++ L Sbjct: 122 IRLQHGSTPQIIEKLDNGSIDFGFVHLPVRERHVEIQPFLTISSLFVVGEQNRELAERPL 181 Query: 183 SIEELLQYPIILFSRSSRARMAITDLFRGYGYELKPEFEVGSVGLLIEFARKGLGISFVT 242 +EE+L YP+I FS SS + + LF G ++P+ EVGSV LLIE + G+G++FVT Sbjct: 182 PLEEVLDYPLITFSESSSSTQFLQRLFERQGLHVQPDIEVGSVELLIECVKLGMGVAFVT 241 Query: 243 REFVSKELEEGSLFEIQLDVQLPPAQVGMMTMRNMPLTTAASKFIE 288 ++FV +ELE+G L +Q+ + +G++T R PL+ AA F+E Sbjct: 242 KDFVLRELEKGELMPLQMKEPIEQRAIGIVTKRGQPLSLAAKVFLE 287 >sll0030 [K] COG0583 Transcriptional regulator Length = 304 Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 125/236 (52%), Gaps = 1/236 (0%) Query: 7 YKVFYWAAKTGSLTQAAKSLYITQPSVSHAIKQLEDSFGLTLFTRNSKGVVLTPEGATLY 66 ++VF A+TGS T+AA+ L++TQP+VS +KQL + G+ L+ + + + LT G + Sbjct: 9 FEVFAAIARTGSFTKAAEELFLTQPTVSQQMKQLTKAIGVPLYEQIGRKIYLTEAGQAVL 68 Query: 67 SYIEQSHILITQAEKKMAELKNLDNGELRIGGSDSLFKHYLLPFIEVFHQRYPGIRLHLI 126 + + Q ++ +A+L+ L G LR+ + + K+++ + F Q+YPGI + L Sbjct: 69 DASKNITSCLDQLQEVIADLQGLKKGNLRLA-TITTGKYFVPRLLGEFRQQYPGISISLQ 127 Query: 127 HGTTPEVISYLKEGLVDLGVVRMPITDPQLEVRQGLQLQDCFIAGSHYAGLNQKVLSIEE 186 G +++ L L DL + P ++ + +R L+ IA + + +K +S+E Sbjct: 128 IGNRQQILERLANNLDDLYFLGKPPSNLDINIRHFLENPLVVIASRQHPLVKEKKISLER 187 Query: 187 LLQYPIILFSRSSRARMAITDLFRGYGYELKPEFEVGSVGLLIEFARKGLGISFVT 242 L+ P+I+ S RMA+ + F ++ E E+ S + + GLGIS ++ Sbjct: 188 LVNEPLIMRESGSGTRMAVEEFFSENRLKMNVEMEISSNEAIKQAVYGGLGISILS 243 >all4986 [K] COG0583 Transcriptional regulator Length = 313 Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 68/253 (26%), Positives = 127/253 (50%), Gaps = 1/253 (0%) Query: 3 NFELYKVFYWAAKTGSLTQAAKSLYITQPSVSHAIKQLEDSFGLTLFTRNSKGVVLTPEG 62 + E ++F A+ S T+AA+ L+ TQPSVS IKQL ++ GL LF + LTP G Sbjct: 18 SLEHLRIFEATARHKSFTRAAEELFTTQPSVSRHIKQLTETIGLPLFKYVDNCIQLTPTG 77 Query: 63 ATLYSYIEQSHILITQAEKKMAELKNLDNGELRIGGSDSLFKHYLLPFIEVFHQRYPGIR 122 L ++ + + K+ +LK+++ G L++ + K+ + ++ F + YP IR Sbjct: 78 EELLIIYKEIFQYLENFDTKLVDLKDINQGYLKVSAVTT-SKYVITNLLQPFCKLYPDIR 136 Query: 123 LHLIHGTTPEVISYLKEGLVDLGVVRMPITDPQLEVRQGLQLQDCFIAGSHYAGLNQKVL 182 + L +++ +++ D ++ P +E++ L +A S++ +NQ + Sbjct: 137 IALEFTNHEAILTRIQDNADDFYILGYPPKKEDIEIKPFLDNPLVVVAPSNHPFVNQSSI 196 Query: 183 SIEELLQYPIILFSRSSRARMAITDLFRGYGYELKPEFEVGSVGLLIEFARKGLGISFVT 242 S+E L + +I+ R S RMA+ LF G + + EV S + +GLG++ ++ Sbjct: 197 SLERLAKEQLIMRERGSETRMAVEMLFAERGIRMPVKLEVSSNNATKQAVLEGLGLAVLS 256 Query: 243 REFVSKELEEGSL 255 + EL+ L Sbjct: 257 IHTLYPELQRNQL 269 >all0862 [K] COG0583 Transcriptional regulator Length = 306 Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 128/253 (50%), Gaps = 5/253 (1%) Query: 9 VFYWAAKTGSLTQAAKSLYITQPSVSHAIKQLEDSFGLTLFTRNSKGVVLTPEGATLYSY 68 +F AA+ GS T+AA+ L++TQP+VS IKQL S GL LF + K + LT G L++ Sbjct: 1 MFEAAARHGSFTRAAEELFLTQPTVSMQIKQLTKSVGLPLFEQVGKRLYLTEAGRELFAT 60 Query: 69 IEQSHILITQAEKKMAELKNLDNGELRIGGSDSLFKHYLLPFIEVFHQRYPGIRLHLIHG 128 Q I Q E K+A+LK L G+LR+ + K+++ + F Q YPGI + L Sbjct: 61 CRQIFETIAQFEMKVADLKGLKQGQLRLAVITTA-KYFIPRLLGPFCQLYPGIDISLQVT 119 Query: 129 TTPEVISYLKEGLVDLGVVRMPITDPQLEVRQGLQLQDCFI--AGSHYAGLNQKVLSIEE 186 ++ + + DL + M L+V L + + A +++ +K + I+ Sbjct: 120 NHERILERMMSNMDDLYI--MSQVPEHLDVTSQPFLDNPLVVFAPANHPLAQEKNIPIQR 177 Query: 187 LLQYPIILFSRSSRARMAITDLFRGYGYELKPEFEVGSVGLLIEFARKGLGISFVTREFV 246 L P I+ S R A+ +L G +K + E+GS + + GLGIS ++R + Sbjct: 178 LSSEPFIMREPGSGTRRAVQNLLEEQGVSVKVKLELGSNEAIKQAIAGGLGISVLSRHTL 237 Query: 247 SKELEEGSLFEIQ 259 + E S+ ++Q Sbjct: 238 LSDAAEFSILDVQ 250 >STM0256 [K] COG0583 Transcriptional regulator Length = 130 Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 0/257 (0%), Positives = 0/257 (0%), Gaps = 3/257 (1%) Query: 9 VFYWAAKTGSLTQAAKSLYITQPSVSHAIKQLEDSFGLTLFTRNSKGVVLTPEGATLYSY 68 +Y + H++ + +F + + Sbjct: 10 FWYKFIMILLWVVSFDLTIFLFYKPLHSVLRYSILILDIIFGVWVFSLFKKEIVIDVEKS 69 Query: 69 IEQSHILITQAEKKMAELKNLDNGELRIGGSDSLFKHYLLPFIEVFHQRYPGIRLHLIHG 128 + + + + + E+ + Sbjct: 70 RLILGKESFDLSSIERVERYGMSIVFYLSDGTRRVFSHPIEDFELLRKLIDEKGSGWF-- 127 Query: 129 TTPEVISYLKEGLVDLGVVRMPITDPQLEVRQGLQLQDCFIAGSHYAGLNQKVLSIEELL 188 Sbjct: 128 - 186 Query: 189 QYPIILFSRSSRARMAITDLFRGYGYELKPEFEVGSVGLLIEFARKGLGISFVTREFVSK 248 Sbjct: 187 246 Query: 249 ELEEGSLFEIQLDVQLP 265 Sbjct: 247 263 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.138 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,725,684 Number of extensions: 871269 Number of successful extensions: 3256 Number of sequences better than 1.0e-05: 1530 Number of HSP's gapped: 3175 Number of HSP's successfully gapped: 1530 Length of query: 291 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 186 Effective length of database: 26,268,361 Effective search space: 4885915146 Effective search space used: 4885915146 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)