BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0012.p (222 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2886 [G] COG0176 Transaldolase 246 2e-65 aq_1194 [S] COG4636 Uncharacterized protein conserved in cyanoba... 224 7e-59 aq_1195 [C] COG0674 Pyruvate:ferredoxin oxidoreductase and relat... 224 7e-59 aq_1192a [C] COG1144 Pyruvate:ferredoxin oxidoreductase and rela... 224 7e-59 aq_1196 [C] COG1013 Pyruvate:ferredoxin oxidoreductase and relat... 224 7e-59 >lin2886 [G] COG0176 Transaldolase Length = 214 Score = 246 bits (628), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 126/221 (57%), Positives = 162/221 (73%), Gaps = 7/221 (3%) Query: 1 MKFFIDTANVEDIKKAYQIGVLSGVTTNPSLVAKEGVKFEDRIAEILRTVPEVESVSAEV 60 M+FFIDTANVE+IKKA ++G ++GVTTNPSLVAKEG F + I EI V +S EV Sbjct: 1 MRFFIDTANVEEIKKANRMGFIAGVTTNPSLVAKEGRDFNEVIQEITSIVDG--PISGEV 58 Query: 61 TPDAVTAEEMIAQANELIKINNYDKNITIKLPMTLAGLEACRYLTQKGVKTNVTLIFTVN 120 ++ AEEMI + + KI+ N+ +K+PMT GL A + LT++G+KTNVTL+F+ Sbjct: 59 V--SLNAEEMIEEGRVIAKIH---PNMVVKIPMTGEGLAAVKVLTEEGIKTNVTLVFSAT 113 Query: 121 QALLAARAGATYVSPFLGRLDDISEDGVQLIVKVAELFRIHNLDAQIIAASVRHPDHVTR 180 QALLAARAGATYVSPFLGRLDDI +DG+ LI +AE+F H + +II+ASVRHP HV Sbjct: 114 QALLAARAGATYVSPFLGRLDDIGDDGLVLIRDIAEIFETHGIPTEIISASVRHPIHVIE 173 Query: 181 VAMAGAHIATIPFSVIEQISKHPLTDQGLEKFAADWKKAPQ 221 A AGA IAT+P+ V EQ+ KHPLTD G++KF ADW+ A + Sbjct: 174 CAKAGADIATVPYKVFEQMLKHPLTDSGIDKFLADWEAAKK 214 >aq_1194 [S] COG4636 Uncharacterized protein conserved in cyanobacteria Length = 217 Score = 224 bits (572), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 114/223 (51%), Positives = 157/223 (70%), Gaps = 11/223 (4%) Query: 1 MKFFIDTANVEDIKKAYQIGVLSGVTTNPSLVAKEGVKFEDRIAEILRTVPEVESVSAEV 60 MKFF+DTANVE+IKKA + G+L GVTTNP+L++K G F++ + EIL E V V Sbjct: 1 MKFFLDTANVEEIKKAMEWGILDGVTTNPTLISKTGRPFKEVVKEIL------ELVDGPV 54 Query: 61 TPDAVT--AEEMIAQANELIKINNYDKNITIKLPMTLAGLEACRYLTQKGVKTNVTLIFT 118 + + V+ AE MI + L ++ +N+ +K+PMT GL+A L +G+ TNVTL+F+ Sbjct: 55 SLETVSLDAEGMIREGRMLAELG---ENVVVKIPMTPEGLKAVIALESEGIPTNVTLVFS 111 Query: 119 VNQALLAARAGATYVSPFLGRLDDISEDGVQLIVKVAELFRIHNLDAQIIAASVRHPDHV 178 QALLAA+AGA+YVSPF+GRLDDIS +G++LI ++ +F + D +II ASVRHP HV Sbjct: 112 PTQALLAAKAGASYVSPFVGRLDDISGEGMKLIEEIKTIFSNYEFDTEIIVASVRHPMHV 171 Query: 179 TRVAMAGAHIATIPFSVIEQISKHPLTDQGLEKFAADWKKAPQ 221 A+ GA I T+PF V+EQ+ KHPLTD GLE+F DW+K P+ Sbjct: 172 LESALIGADICTMPFKVMEQLFKHPLTDIGLERFLKDWEKVPE 214 >aq_1195 [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Length = 346 Score = 224 bits (572), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 10/223 (4%), Positives = 42/223 (18%), Gaps = 11/223 (4%) Query: 1 MKFFIDTANVEDIKKAYQIGVLSGVTTNPSLVAKEGVKFEDRIAEILRTVPEVESVSAEV 60 M++ + ++ + G + + + + ++ + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLI------DVAEMYP 54 Query: 61 TPDAVT--AEEMIAQANELIKINNYDKNITIKLPMTLAGLEACRYLTQKGVKTNVTLIFT 118 P N L K + + ++G + + Sbjct: 55 VPPRPETQGLTETYVGNWLAKHG---SREKLIIASKVSGPSRNNDKGIRPDQALDRKNIR 111 Query: 119 VNQALLAARAGATYVSPFLGRLDDISEDGVQLIVKVAELFRIHNLDAQIIAASVRHPDHV 178 R Y+ + + + + A + Sbjct: 112 EALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAG 171 Query: 179 TRVAMAGAHIATIPFSVIEQISKHPLTDQGLEKFAADWKKAPQ 221 + ++ ++ + + Sbjct: 172 KIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRS 214 >aq_1192a [C] COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit Length = 346 Score = 224 bits (572), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 10/223 (4%), Positives = 42/223 (18%), Gaps = 11/223 (4%) Query: 1 MKFFIDTANVEDIKKAYQIGVLSGVTTNPSLVAKEGVKFEDRIAEILRTVPEVESVSAEV 60 M++ + ++ + G + + + + ++ + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLI------DVAEMYP 54 Query: 61 TPDAVT--AEEMIAQANELIKINNYDKNITIKLPMTLAGLEACRYLTQKGVKTNVTLIFT 118 P N L K + + ++G + + Sbjct: 55 VPPRPETQGLTETYVGNWLAKHG---SREKLIIASKVSGPSRNNDKGIRPDQALDRKNIR 111 Query: 119 VNQALLAARAGATYVSPFLGRLDDISEDGVQLIVKVAELFRIHNLDAQIIAASVRHPDHV 178 R Y+ + + + + A + Sbjct: 112 EALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAG 171 Query: 179 TRVAMAGAHIATIPFSVIEQISKHPLTDQGLEKFAADWKKAPQ 221 + ++ ++ + + Sbjct: 172 KIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRS 214 >aq_1196 [C] COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit Length = 346 Score = 224 bits (572), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 10/223 (4%), Positives = 42/223 (18%), Gaps = 11/223 (4%) Query: 1 MKFFIDTANVEDIKKAYQIGVLSGVTTNPSLVAKEGVKFEDRIAEILRTVPEVESVSAEV 60 M++ + ++ + G + + + + ++ + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLI------DVAEMYP 54 Query: 61 TPDAVT--AEEMIAQANELIKINNYDKNITIKLPMTLAGLEACRYLTQKGVKTNVTLIFT 118 P N L K + + ++G + + Sbjct: 55 VPPRPETQGLTETYVGNWLAKHG---SREKLIIASKVSGPSRNNDKGIRPDQALDRKNIR 111 Query: 119 VNQALLAARAGATYVSPFLGRLDDISEDGVQLIVKVAELFRIHNLDAQIIAASVRHPDHV 178 R Y+ + + + + A + Sbjct: 112 EALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAG 171 Query: 179 TRVAMAGAHIATIPFSVIEQISKHPLTDQGLEKFAADWKKAPQ 221 + ++ ++ + + Sbjct: 172 KIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRS 214 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.133 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,727,643 Number of extensions: 516702 Number of successful extensions: 1502 Number of sequences better than 1.0e-05: 37 Number of HSP's gapped: 1480 Number of HSP's successfully gapped: 37 Length of query: 222 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 120 Effective length of database: 26,614,363 Effective search space: 3193723560 Effective search space used: 3193723560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)