BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0010.p (160 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20655 [S] COG3865 Uncharacterized protein conserved in bacteria 150 6e-37 PA2721 [S] COG3865 Uncharacterized protein conserved in bacteria 119 3e-27 SMb20475 [S] COG3865 Uncharacterized protein conserved in bacteria 117 9e-27 SMa0139 [S] COG3865 Uncharacterized protein conserved in bacteria 91 5e-19 PA1358 [S] COG3865 Uncharacterized protein conserved in bacteria 71 6e-13 >SMb20655 [S] COG3865 Uncharacterized protein conserved in bacteria Length = 158 Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 76/158 (48%), Positives = 98/158 (62%), Gaps = 2/158 (1%) Query: 1 MPKIVTNLWFDTEAEEAAKYYTSIFKNSRIT-NTAYYGEGGRRPAGTVLTVTFELDGQVY 59 MPKI+++LWF A EA +Y S NS I+ +T E P G+V + F L Q + Sbjct: 1 MPKIISHLWFPENAREAVDFYVSTIPNSAISGSTTVPAETPSGPPGSVTVIEFRLGDQNF 60 Query: 60 TALNGGPEFKFTEAISLLVNCEGQEEVDELWEK-LSAGGTEGPCGWLKDRYGLSWQIFPT 118 TAL GP F A S+ V C+ QEE+D +W L GG CGWLKDR+GLSWQI P Sbjct: 61 TALEAGPLDPFNHAYSIQVACDSQEELDRIWHAFLDNGGQAEHCGWLKDRWGLSWQIVPR 120 Query: 119 VLGELLNDPDPVKAQRVMQAMLQMGKLDIAALKRAHEG 156 VLGE+++D + +A+RV +AML M K DIAAL+RAH Sbjct: 121 VLGEMISDANRERAKRVTEAMLAMVKFDIAALERAHRS 158 >PA2721 [S] COG3865 Uncharacterized protein conserved in bacteria Length = 159 Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 64/153 (41%), Positives = 90/153 (58%), Gaps = 6/153 (3%) Query: 8 LWFDTEAEEAAKYYTSIFKNSRITNTAYYGEGGRRPAGT---VLTVTFELDGQVYTALNG 64 LW+D+ A EAA +Y F +S + A + G P+G VLTV F + G LNG Sbjct: 9 LWYDSAALEAATFYAETFPDSAVL--AVHRAPGDYPSGKEGDVLTVEFRVMGIPCLGLNG 66 Query: 65 GPEFKFTEAISLLVNCEGQEEVDELWEKL-SAGGTEGPCGWLKDRYGLSWQIFPTVLGEL 123 GP F+ +EA S V + Q E D LW + GG E CGW +D++G+SWQI P VL E Sbjct: 67 GPAFRHSEAFSFQVATDDQAETDRLWNAIVDNGGEESACGWCRDKWGISWQITPRVLSEA 126 Query: 124 LNDPDPVKAQRVMQAMLQMGKLDIAALKRAHEG 156 + PD A+R +AM+ MG++DIA +++A +G Sbjct: 127 IASPDRAAARRAFEAMMTMGRIDIATIEKAFKG 159 >SMb20475 [S] COG3865 Uncharacterized protein conserved in bacteria Length = 164 Score = 117 bits (292), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 66/160 (41%), Positives = 88/160 (55%), Gaps = 7/160 (4%) Query: 1 MPKIVTNLWFDTEAEEAAKYYTSIFKNSRITNTAYYGEGGRRP---AGTVLTVTFELDGQ 57 M K LW+D +AEEAA++Y F S+I A G+ P G VL V F + G Sbjct: 1 MSKNTICLWYDKDAEEAARFYADTFPGSKIG--AVIRAPGKYPDGEEGDVLVVEFTVAGV 58 Query: 58 VYTALNGGPEFKFTEAISLLVNCEGQEEVDELWEKLSA-GGTEGPCGWLKDRYGLSWQIF 116 LNGGP FK +EA S ++ E QEE D W + GG E CGW KD++G+SWQI Sbjct: 59 ACIGLNGGPTFKHSEAFSFQISTEDQEETDRYWNAIVGNGGQESECGWCKDKWGVSWQIT 118 Query: 117 PTVLGELLNDPDPVKAQRVMQAMLQMGKLDIAALKRAHEG 156 P L + L +A+R AM+ M K+D+AA+ A +G Sbjct: 119 PRTLMDALA-AGGEQAKRAFDAMMSMRKIDVAAIDAARKG 157 >SMa0139 [S] COG3865 Uncharacterized protein conserved in bacteria Length = 106 Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 48/111 (43%), Positives = 65/111 (58%), Gaps = 6/111 (5%) Query: 47 VLTVTFELDGQVYTALNGGPEFKFTEAISLLVNCEGQEEVDELWEKLSA-GGTEGPCGWL 105 +LTV F + G LNGGP FK EA S + + QEE D W + GG E CGW Sbjct: 1 MLTVDFTVAG----ILNGGPAFKHNEAFSFQIATDDQEETDRYWNAIVGNGGQESACGWC 56 Query: 106 KDRYGLSWQIFPTVLGELLNDPDPVKAQRVMQAMLQMGKLDIAALKRAHEG 156 KD++G+SWQI P VL E + +A+R +AM+ M K+D+AA++ A G Sbjct: 57 KDKWGISWQITPRVLAEAMAAGGD-EAKRAFEAMMTMKKIDVAAIEAARRG 106 >PA1358 [S] COG3865 Uncharacterized protein conserved in bacteria Length = 132 Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 56/116 (48%), Gaps = 12/116 (10%) Query: 12 TEAEEAAKYYTSIFKNSRITNTAYYGEGGRRPAGTVLTVTFELDGQVYTALNGGPE--FK 69 +AE A +Y S+F ++ I YG G P G+VL F L Q ++ F Sbjct: 14 VQAEAAMNFYLSLFDDAEILQIQRYGAEGPGPEGSVLKALFRLGDQSVHCIDSHVRHAFD 73 Query: 70 FTEAISLLVNCEGQEEVDELWEKLSAGGTE-GPCG---------WLKDRYGLSWQI 115 FT A S V+CE +++ L E LS GG P G WL DR+G+SWQ+ Sbjct: 74 FTPAFSFFVDCESNAQIERLAEALSDGGKALMPLGDYGFSQRFAWLADRFGVSWQL 129 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.135 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 12,602,709 Number of extensions: 527523 Number of successful extensions: 860 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 849 Number of HSP's successfully gapped: 5 Length of query: 160 Length of database: 38,378,431 Length adjustment: 98 Effective length of query: 62 Effective length of database: 27,075,699 Effective search space: 1678693338 Effective search space used: 1678693338 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 111 (47.4 bits)