BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0005.p (520 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value alr3884 [E] COG0747 ABC-type dipeptide transport system, peripla... 177 3e-44 PH0807 [E] COG0747 ABC-type dipeptide transport system, periplas... 169 9e-42 FN0396 [E] COG0747 ABC-type dipeptide transport system, periplas... 147 6e-35 slr1740 [E] COG0747 ABC-type dipeptide transport system, peripla... 139 1e-32 RSc1380 [E] COG0747 ABC-type dipeptide transport system, peripla... 138 2e-32 >alr3884 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 359 Score = 177 bits (450), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 0/525 (0%), Positives = 0/525 (0%), Gaps = 60/525 (11%) Query: 6 LVMSSFSDIVNINPLMINDTSS--GDIAEFVFSKLYNLDREGNVKAEPWSLAADVPEISA 63 +D + L G + + + R+ + +A Sbjct: 46 ARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLPTISAQHF-------HTA 98 Query: 64 DGLTYTVKLKDGIKWSDGQPVTADDVVFTV-DMAKNPETGSPLTSLXXXXXXX-----XX 117 + + + V + + + L Sbjct: 99 VHNEEQLAALEEASLDEPVTVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVS 158 Query: 118 XXXXXXXXXMKQVYAPFLYSLV-QAIVPAHVLKD-VKPKEMQTNP-----YGTD--PAKT 168 P + + Sbjct: 159 HFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPGIILYGVS 218 Query: 169 VTNGPWKWTSWKQGDSHTLDADPNYW-----GEVKPHIAQLVYKIYADQNTEVQALLKGD 223 + +L + GE + V + G Sbjct: 219 PLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGY 278 Query: 224 TDQISAIP----VTQVEAVSANKDIHIIQKPGAQYEYVMFNF-----DSKNFKD--KYGL 272 + + + + + + + + Sbjct: 279 PRAAPSGTPVLVNGREVPIVGRVAMD-MICVDLGPQAQDKAGDPVILWGEGLPVERIAEM 337 Query: 273 FAGQKTRQAIAHALNRQGMVDNILKGVGALMNAPFLPDT--WADPGDAAVNYDYNAETAK 330 Sbjct: 338 397 Query: 331 KLLAEDGW-VAGKDGILTKDGHRFSFELQYNAGNSRREQVAAVIQQNLKEVGIEVTPKAI 389 Sbjct: 398 457 Query: 390 DFAAWIDQNVTPGKFQALLLAWSLNTPDPDSESV---------FSSKYFPPAGQN--SGW 438 Sbjct: 458 -- 515 Query: 439 YK---NEKLDQLWVDGYSTVDQAKRKEIYKEVGKEISTDLPYVFL 480 Sbjct: 516 560 >PH0807 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 597 Score = 169 bits (428), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 153/526 (29%), Positives = 237/526 (45%), Gaps = 37/526 (7%) Query: 3 GGTLVMSSFSDIVNINPLMINDTSSGDIAEFVFSKLYNLDREGNV---KAEPWSLAADVP 59 GGTL++ + D + NP D + IA +F KL LDR+ NV A W Sbjct: 38 GGTLIVLYWGDPKSFNPDAQVDDAGYGIANQIFCKLVTLDRDYNVIPDLAYKW------- 90 Query: 60 EISADGLTYTVKLKDGIKWSDGQPVTADDVVFTVDMAKNPETGSPLTSLXXXXXXXXXXX 119 EIS DG YT L W DG PVTA+DV +T + K + + Sbjct: 91 EISDDGKVYTFYLNPNATWHDGVPVTAEDVKWTFEAIKKYKGIAYGIIHADNIEKIEVVD 150 Query: 120 XXXXXXXMKQVYAPFLYSLV---QAIVPAHVLKDVKPKEMQTNPYGTDPAKTVTNGPWKW 176 +K+ +APFL L I+P H+ + NPY P + GP+K+ Sbjct: 151 NYTVRFYLKEPFAPFLSFLAWYGTFILPKHIYEKYSDWLDPKNPYLNKP---IGCGPFKF 207 Query: 177 TSWKQGDSHTLDADPNYWGEVKPHIAQLVYKIYADQNTEVQALLKGDTDQISAI-PVTQV 235 W +GD TL A+ NY+ +P I +++YKI D + +QA L G+ D + P+T++ Sbjct: 208 VEWVKGDHITLVANENYF-RGRPGIDKIIYKIIPDASAALQAFLAGEGDVLGQRPPLTEI 266 Query: 236 EAVSANKDIHIIQKPGAQYEYVMFNFDSKNFKDKYGLFAGQKTRQAIAHALNRQGMVDNI 295 + + + + +P Y+ FN +D + R AIA+A+NR+ +V+ Sbjct: 267 PRLKSTPGVSVSIRPVPSRWYLGFNLKRPYLQD-------VRVRLAIAYAINRKELVEKA 319 Query: 296 LKGVGALMNAPFLPDT-WADPGDAAVNYDYNAETAKKLLAEDGW--VAGKDGILTKDGHR 352 G+G ++P WA +A + +YN E AK+LL E G+ + G T DG Sbjct: 320 ENGLGYPAEGTYVPAIKWAYNPNAKLP-EYNPEKAKQLLDEAGFKDINGDGFRETPDGKP 378 Query: 353 FSFELQYNAGNSRREQVAAVIQQNLKEVGIEVTPKAIDFAAWIDQNVTPGKFQALLLAWS 412 L Y G S + +I++ L +VG++V ++ + A W +Q V + L L Sbjct: 379 LELRLLYFTG-SDTNAICTLIKEQLAKVGLKVKLESYEIATW-EQKVVKERDFDLALVDG 436 Query: 413 LNTPDPDSESVFSSKYFPPAGQNSGWYKNEKLDQLWVDGYSTVDQAKRKEIYKEVGKEIS 472 PDP + + ++ A N Y N + D+L + T D KRKE+Y + + ++ Sbjct: 437 FQGPDPANMEI---RFKSTAYINFAGYNNTEFDKLLEEAAKTTDTEKRKELYWKAQEILA 493 Query: 473 TDLPYVFLYQYGQAIGTGPRVHWAE-EDAPEPSLGYGQYFHAIKWW 517 DLPY+ L H ED +G G Y A+ WW Sbjct: 494 KDLPYLPLVDLVAISVWRSEFHGMPWEDEAVGKVGIGSY--AMVWW 537 >FN0396 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 511 Score = 147 bits (370), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 132/511 (25%), Positives = 228/511 (44%), Gaps = 50/511 (9%) Query: 5 TLVMSSFSDIVNINPLMINDTSSGDIAEFVFSKLYNLDREG---NVKAEPWSLAADVPEI 61 TLV+ + +D +++P ND S ++ +F L +LD +G + AE W Sbjct: 39 TLVIGNGADAKSLDPHASNDNPSSNVRVQIFDTLMDLDDDGIPQPMLAESWE-------- 90 Query: 62 SADGLTYTVKLKDGIKWSDGQPVTADDVVFTVDMA-KNPETGSPLTSLXXXXXXXXXXXX 120 D T L+ G+K+ +G + A DV F+++ A K+PE L + Sbjct: 91 RPDDKTIIFHLRKGVKFHNGDEMKASDVKFSLERALKSPEVSHILAGINGVEVLDDYTVK 150 Query: 121 XXXXXXMKQVYAPFLYSLVQAIVPAHVLKDVKPKEMQTNPYGTDPAKTVTNGPWKWTSWK 180 M + ++ + AI+ + K Q NP GT GP+K+ SW+ Sbjct: 151 VTTEKPMAAILNNLSHTTI-AILSEKATTEAGDKFGQ-NPIGT--------GPYKFVSWQ 200 Query: 181 QGDSHTLDADPNYWGEVKPHIAQLVYKIYADQNTEVQALLKGDTDQISAIPVTQVEAVSA 240 GD TL+A P+YW P + +V++ ++ L G+ D I + Sbjct: 201 SGDRITLEAFPDYWRGETP-VKNIVFRNIVEETNRTIGLETGELDIAYDIKGLDKNKLKE 259 Query: 241 NKDIHIIQKPGAQYEYVMFNFDSKNFKDKYGLFAGQKTRQAIAHALNRQGMVDNILKGVG 300 ++ +++ P Y+ FN + + K R+AI++A++++ ++D + G G Sbjct: 260 DERFTLLEGPQVSITYLGFNL-------RKAPYDNLKVREAISYAIDQKPIIDTVFLGAG 312 Query: 301 ALMNAPFLPDTWADPGDAAV-NYDYNAETAKKLLAEDGWVAGKDGILTKDGHRFSFELQY 359 N+ P+ W G V Y + E AK LL E G+ G F ++ Sbjct: 313 EPANSIIGPNIW---GYYDVEKYTQDIEKAKALLVEAGYPNG-----------FKAKIWV 358 Query: 360 NAGNSRREQVAAVIQQNLKEVGIEVTPKAIDFAAWIDQNVTPGKFQALLLAWSLNTPDPD 419 N RR+ A ++Q LK++GI++T + +++ A++D G + LL W T DPD Sbjct: 359 NDNPVRRD-TAVILQDQLKQIGIDLTIETVEWGAFLD-GTARGDHEMYLLGWGTVTRDPD 416 Query: 420 SE--SVFSSKYFPPAGQNSGWYKNEKLDQLWVDGYSTVDQAKRKEIYKEVGKEISTDLPY 477 + SS AG N +Y N ++D+L G + +D KRK+IYK++ + + D+P Sbjct: 417 YGMFELISSSTMGAAG-NRSFYSNPEVDKLLEAGKTELDPEKRKDIYKQIQEIVRRDIPM 475 Query: 478 VFLYQYGQAIGTGPRVHWAEEDAPEPSLGYG 508 + Q + T V + DA + YG Sbjct: 476 YMIVYPLQNVITKKDVKNFKLDAAQTYRLYG 506 >slr1740 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 582 Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 135/526 (25%), Positives = 230/526 (43%), Gaps = 49/526 (9%) Query: 5 TLVMSSFSDIVNINPLMINDTSSGDIAEFVFSKLYNLDREGNVKAEPWSLAADVPEI--- 61 TL + S+ +NP + + + L + D+EGN+ P+ LAA++P + Sbjct: 46 TLKILSWQAPTILNPHLATGFKDAEASRIALEPLASFDQEGNLV--PF-LAAEIPSVENG 102 Query: 62 --SADGLTYTVKLKDGIKWSDGQPVTADDVVFTVDMAKNPETGSPLTSLXXXXXXXXXXX 119 +ADGL+ T KLK + WSDGQP +A+DV FT +P+TG+ T Sbjct: 103 GVAADGLSVTWKLKPDVLWSDGQPFSAEDVAFTYKFLSDPKTGATSTGTYEAIAKVEALD 162 Query: 120 XXXXXXXMKQV----YAPFLYSLVQAIVPAHVLKDVKPKEMQTNPYGTDPAKTVTNGPWK 175 K+ + PF+ S I+P H+ KD ++ + P P T GP++ Sbjct: 163 KNTVKITFKEPNPAWFLPFVGS-EGMILPQHIYKDFVGEKARQAPANLLPIGT---GPYR 218 Query: 176 WTSWKQGDSHTLDADPNYWGEVKPHIAQLVYKIYADQNTEVQALLK-GDTDQISAIPVTQ 234 TS+K GD + +P+Y Q+ K D + +A+L+ GD D + V Sbjct: 219 VTSFKPGDVVLYEVNPHYRDRKNIGFQQVEIKGGGDATSAARAVLQTGDADFALNLQVED 278 Query: 235 --VEAVSANKDIHIIQKPGAQYEYVMFNF----------DSKNFKDKYGLFAGQKTRQAI 282 +++++ I+ G+ E V+FN D + K + R+AI Sbjct: 279 NILQSLAQGGKGEIVADLGSLSERVIFNLSDPDPARTNGDRSSVKFPHPFLQDPLVRKAI 338 Query: 283 AHALNRQGMVDNILKGVGA--LMNAPFLPDTWADPGDAAVNYDYNAETAKKLLAEDGWV- 339 ++R ++ L GV N LP +A ++ +N A++LL + GW Sbjct: 339 TLGIDRD-LIAKQLYGVTGQPTANVLVLPQQYA---SQNTSFQFNPTEAQQLLDQAGWKD 394 Query: 340 AGKDGILTKDGHRFSFELQYNAGNSRREQVAAVIQQNLKEVGIEVTPKAIDFAAWIDQNV 399 + +GI KDG Q + N R++ VI+Q L+ +G+ V K+ID + + + Sbjct: 395 SNGNGIRDKDGIELQMVFQTSV-NPLRQKTQQVIKQTLQAIGVGVELKSIDPSVFFSGDP 453 Query: 400 ----TPGKFQALLLAWSLNTPDPDSE---SVFSSKYFPPA-----GQNSGWYKNEKLDQL 447 T +FQ L ++ +PD F+ P A G N G Y + + DQL Sbjct: 454 ANPDTLERFQGDLSMFTTGNTNPDPSKYMQTFTCGAIPTAENQWSGDNYGRYCSAEYDQL 513 Query: 448 WVDGYSTVDQAKRKEIYKEVGKEISTDLPYVFLYQYGQAIGTGPRV 493 W + +D KR++++ ++ + D V + +G G R+ Sbjct: 514 WQKAVAELDPEKRQQLFIQMNDLLVDDYILVPVVHRASVVGVGDRL 559 >RSc1380 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 517 Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 124/496 (25%), Positives = 207/496 (41%), Gaps = 67/496 (13%) Query: 7 VMSSFSDIVNINPLMINDTSSGDIAEFVFSKLYNLDREG---NVKAEPWSLAADVPEISA 63 VM+ +S ++P NDT S A+ + L+ D++ NV E + ++S Sbjct: 34 VMAVYSTFTTMDPYDANDTLSFSAAKSFYQGLFGFDKDMKLVNVLCESY-------DVSK 86 Query: 64 DGLTYTVKLKDGIKWSDGQPVTADDVVFTVDMAKNPETGSPLTSLXXXXXXXXXXXXXXX 123 DGL YT +L G+K+ DG A+ V +D NP +L Sbjct: 87 DGLVYTFRLHKGVKFHDGTTFDANAVKANLDRVTNPANKLKRYTLFNRVAKTEVVDPYTA 146 Query: 124 XXXMKQVYAPFLYSLVQAIVPAHVLKDVKPKEMQTNPYGTDPA-KTVTNGPWKWTSWKQG 182 +K+ ++PF+ L P+ + + P +Q YG D A V GP+++ WKQ Sbjct: 147 RVTLKEPFSPFVNVLAH---PSAAM--ISPAALQK--YGKDIAFHPVGTGPFEFVEWKQT 199 Query: 183 DSHTLDADPNYWGEVKPHIAQLVYKIYADQNTEVQALLKGDTDQISAIPVTQVEAVSANK 242 D YW P I + +K D NT + G+ D +IP Q + + Sbjct: 200 DYLKGKKFAGYWKTGLPKIDTITWKPVVDNNTRATVMQTGEADFAFSIPFEQAAVLKGSP 259 Query: 243 DIHIIQKPGAQYEYVMFNFDSKNFKDKYGLFAGQKTRQAIAHALNRQGMVDNILKGVGAL 302 + +I P Y+ FN K F + K RQAI +A+N+ AL Sbjct: 260 KVDLIAAPSIIQRYITFNTRVKPFDNP-------KVRQAINYAINKD-----------AL 301 Query: 303 MNAPFLPDTWADPGDAAVN-----------YDYNAETAKKLLAEDGWVAGKDGILTKDGH 351 F ++A P D V + YN A+ LL E G+ DG Sbjct: 302 TKVAF--SSYAVPADGVVPQGVDYAVKLGPWPYNPAKARALLKEAGY---------PDGF 350 Query: 352 RFSFELQYNAGNSRREQVAAVIQQNLKEVGIEVTPKAIDFAAWIDQNVTPGK-----FQA 406 YN ++ +++ +QQ L +VGI+ +A++ +++ + K + Sbjct: 351 ETQLWSAYN--HTTAQKIIQFVQQQLAQVGIKAQVQALEAGQRVERVESVQKPEDAGVRM 408 Query: 407 LLLAWSLNTPDPD--SESVFSSKYFPPAGQNSGWYKNEKLDQLWVDGYSTVDQAKRKEIY 464 + WS +T + D + +S+ PP N+ +YKN+++D T D+A++ ++Y Sbjct: 409 YYMGWSSSTGESDWAIRPLLASEAMPPKQLNTAYYKNDQVDADIAGALRTTDRAEKTKLY 468 Query: 465 KEVGKEISTDLPYVFL 480 + K I D P+ FL Sbjct: 469 TDAQKRIWEDAPWAFL 484 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.133 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 41,214,194 Number of extensions: 1815060 Number of successful extensions: 4227 Number of sequences better than 1.0e-05: 179 Number of HSP's gapped: 3910 Number of HSP's successfully gapped: 206 Length of query: 520 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 409 Effective length of database: 25,576,357 Effective search space: 10460730013 Effective search space used: 10460730013 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 118 (50.1 bits)