BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0004.p (323 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_appB [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 278 7e-75 CAC0177 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 256 4e-68 all2012 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 233 4e-61 lin0183 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 227 2e-59 STM3629 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 225 8e-59 >BS_appB [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 317 Score = 278 bits (711), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 135/316 (42%), Positives = 204/316 (64%), Gaps = 2/316 (0%) Query: 1 MTEYLIRRVLQSXXXXXXXXXXXXXXXHAAPGGPTQMMLSPGLSPEVFKQQAHNLGLDQP 60 M Y+IRR L S AAPG P +M+ P +S +Q GL+ P Sbjct: 1 MAAYIIRRTLMSIPILLGITILSFVIMKAAPGDPMTLMMDPKISQADREQFIEKYGLNDP 60 Query: 61 VPVQYVRWISGLLQGDLGYTF-KNHLPVADLLWPRIGNTFILMGAAWLLSLIIAIPWGIY 119 VQY++W+ ++QGD G + + PV++L+ R+ NT +LM + +L+L+I+IP+G+ Sbjct: 61 QYVQYLKWLGNMVQGDFGTSIVRKGTPVSELIMARLPNTLLLMLVSTILALMISIPFGVL 120 Query: 120 NSTKVYGLSDQSASFISYLGFAMPTFWFGILLQQWFSLKLNWFPLSDMHTRGKEGDIGDL 179 ++ + Y D +F S++G A+P FWFG++L S+ L WFP + T E +I D Sbjct: 121 SAKRPYSKIDYGITFTSFIGLAIPNFWFGLILIMVLSVNLGWFPTGGVETLNTEFNIFDR 180 Query: 180 LMHLVLPVTVLSLGFLASYMKYARASMLEVLDQDYIRTARAKGVKERKVVFHHALRNALI 239 + HL+LP VL+ +A +Y R++ML+VL+QDYIRTARAKG KE +V+F H LRNAL+ Sbjct: 181 IHHLILPAFVLATADMAGLTRYTRSNMLDVLNQDYIRTARAKGFKENRVLFKHGLRNALL 240 Query: 240 PIITILGLDLPILVAGAALTESVFNWPGMGRWFVQMASERE-YSVLMAITIVTAVMVVLG 298 P+ITI GL +P + G+ + E +F WPG+G+ FV A +R ++MA+T+++AV+VV+G Sbjct: 241 PVITIFGLMIPSFIGGSVVVEQIFTWPGLGKLFVDSAFQRTIIRIIMAMTVISAVLVVVG 300 Query: 299 NLLADILYAIVDPRVK 314 NL+ADILYAIVDPR++ Sbjct: 301 NLIADILYAIVDPRIE 316 >CAC0177 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 322 Score = 256 bits (654), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 132/320 (41%), Positives = 198/320 (61%), Gaps = 5/320 (1%) Query: 1 MTEYLIRRVLQSXXXXXXXXXXXXXXXHAAPGGPTQMM-LSPGLSPEVFKQQAHNLGLDQ 59 M Y+++R+LQ APG M ++ ++ Q H LD+ Sbjct: 1 MLRYIVKRLLQMIPILIGVSIVIFIIFSLAPGDIVDNMGVNSHMTTAKASQLRHLYHLDK 60 Query: 60 PVPVQYVRWISGLLQGDLGYTFKNHLPVADLLWPRIGNTFILMGAAWLLSLIIAIPWGIY 119 P+QY+ WI G+ GY+ + PV+ ++ I N+FIL +++ ++++AIP GI Sbjct: 61 SKPLQYLYWIKDAASGNFGYSLEYRQPVSTVIKSYIWNSFILSFMSFIAAIVLAIPIGIV 120 Query: 120 NSTKVYGLSDQSASFISYLGFAMPTFWFGILLQQWFSLKLNWFPLSDMHTRGKEG----D 175 ++TK Y D + I+ +G ++P F+ G+LL +WF + FP+S M T G Sbjct: 121 SATKQYSAFDSIFTVIALIGISIPAFFMGLLLIKWFCIDFKIFPVSGMTTSGSNAAGIKK 180 Query: 176 IGDLLMHLVLPVTVLSLGFLASYMKYARASMLEVLDQDYIRTARAKGVKERKVVFHHALR 235 GD+L H+ LP VL+ +AS M+Y R SMLEV+ QDYIRTARAKG+KE+ V++ HALR Sbjct: 181 FGDILYHMFLPFLVLTFESVASLMRYMRTSMLEVIRQDYIRTARAKGLKEKVVIYKHALR 240 Query: 236 NALIPIITILGLDLPILVAGAALTESVFNWPGMGRWFVQMASEREYSVLMAITIVTAVMV 295 N+LIP+ITILG+ LP L GA +TE +F+WPG+GR +Q S R+Y +LM T++ AV+ Sbjct: 241 NSLIPVITILGMWLPGLFCGAIITEQIFSWPGIGRVTLQAVSHRDYPLLMGFTMLIAVLT 300 Query: 296 VLGNLLADILYAIVDPRVKL 315 +LGNL+AD+ YA+VDPR++L Sbjct: 301 LLGNLVADVAYAVVDPRIRL 320 >all2012 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 335 Score = 233 bits (593), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 119/321 (37%), Positives = 196/321 (61%), Gaps = 5/321 (1%) Query: 1 MTEYLIRRVLQSXXXXXXXXXXXXXXXHAAPGGPT-QMMLSPGLSPEVFKQQAHNLGLDQ 59 M +YLI R+L + APG P + L+P ++ EV + +LGLDQ Sbjct: 16 MNKYLINRLLVAIPTLIAISLVIFTILALAPGDPMGEFALNPSITAEVRENIKRSLGLDQ 75 Query: 60 PVPVQYVRWISGLLQGDLGYTFKNHLPVADLLWPRIGNTFILMGAAWLLSLIIAIPWGIY 119 P+ ++Y++W+ ++GD+GY+F + PV DL+ R+ T ++GAA+LL I+AIP G+ Sbjct: 76 PIHIRYIKWVIAFVRGDMGYSFTSRSPVIDLILQRLPTTLWVVGAAYLLGAILAIPLGVI 135 Query: 120 NSTKVYGLSDQSASFISYLGFAMPTFWFGILLQQWFSLKLNWFPL---SDMHTRGKEGDI 176 ++ K + + D + + + GF++PTF+ G+L FS++L W P S + + + I Sbjct: 136 SALKRHTIIDHVLTTLVFFGFSLPTFFTGLLFIIIFSIQLKWLPFIYNSTLQVKDWQSFI 195 Query: 177 GDLLMHLVLPVTVLSLGFLASYMKYARASMLEVLDQDYIRTARAKGVKERKVVFHHALRN 236 + ++P++VL+L A M++ R+ +LE + QDY+RTA AKG+ + V+ H LRN Sbjct: 196 AQI-QQSIMPISVLALWQTAMLMRFVRSEILENIHQDYVRTAYAKGLSKFVVIRRHILRN 254 Query: 237 ALIPIITILGLDLPILVAGAALTESVFNWPGMGRWFVQMASEREYSVLMAITIVTAVMVV 296 ALIP++T++ LD+P + GA +TE VF PG+G + + + V+MAIT + A+++V Sbjct: 255 ALIPVVTLIALDIPSVFTGALVTEKVFRVPGIGALLIDSIYKNDTPVVMAITFIYAILIV 314 Query: 297 LGNLLADILYAIVDPRVKLGK 317 + NL+ADILY +DPRVK K Sbjct: 315 IFNLVADILYGFLDPRVKYTK 335 >lin0183 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 671 Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 19/314 (6%), Positives = 55/314 (17%), Gaps = 1/314 (0%) Query: 1 MTEYLIRRVLQSXXXXXXXXXXXXXXXHAAPGGPTQMMLSPGLSPEVFKQQAHNLGLDQP 60 M + P ++ E + Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQ 60 Query: 61 VPVQYVRWISGLLQGDLGYTFKNHLPVADLLWPRIGNTFILMGAAWLLSLIIAIPWGIYN 120 ++ ++ +++ + + ++ + Sbjct: 61 RVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLA 120 Query: 121 STKVYGLSDQSASFISYLGFAMPTFWFGILLQQWFSLKLNWFPLSDMHTRGKEGDIGDLL 180 + +Y ++ G + + LKL+ + E Sbjct: 121 VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGE-VFLPQA 179 Query: 181 MHLVLPVTVLSLGFLASYMKYARASMLEVLDQDYIRTARAKGVKERKVVFHHALRNALIP 240 + G A+ I R V Sbjct: 180 GFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTH 239 Query: 241 IITILGLDLPILVAGAALTESVFNWPGMGRWFVQMASEREYSVLMAITIVTAVMVVLGNL 300 + +L L +T + + + ++ + Sbjct: 240 LGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQ 299 Query: 301 LADILYAIVDPRVK 314 L + A Sbjct: 300 LGFVARAPRWAVAF 313 >STM3629 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 339 Score = 225 bits (573), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 123/339 (36%), Positives = 191/339 (56%), Gaps = 22/339 (6%) Query: 1 MTEYLIRRVLQSXXXXXXXXXXXXXXXHAAPGGPTQMMLSP-GLSPEVFKQQAHNLGLDQ 59 M ++++RR+ H PG P +M G+SPE Q LGLD+ Sbjct: 1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDK 60 Query: 60 PVPVQYVRWISGLLQGDLGYTFKNHLPVADLLWPRIGNTFILMGAAWLLSLIIAIPWGIY 119 P+ QY+ +I G++ GDLG + K+ +PV D PR T L A + ++ + IP G+ Sbjct: 61 PMWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVL 120 Query: 120 NSTKVYGLSDQSASFISYLGFAMPTFWFGILLQQWFSLKLNWFPLS-------------- 165 + K + D +A ++ G++MP FW+G++L S+ N P+S Sbjct: 121 AAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDTNP 180 Query: 166 -------DMHTRGKEGDIGDLLMHLVLPVTVLSLGFLASYMKYARASMLEVLDQDYIRTA 218 D G+EG+ D L H++LP VL LA ++ R+SMLEVL +DYIRTA Sbjct: 181 LTGFMLIDTAIWGEEGNFIDALAHMILPAMVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA 240 Query: 219 RAKGVKERKVVFHHALRNALIPIITILGLDLPILVAGAALTESVFNWPGMGRWFVQMASE 278 RAKG+ +V+ HALRNA++P++T++GL + L+AGA LTE++F+WPG+GRW + Sbjct: 241 RAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQR 300 Query: 279 REYSVLMAITIVTAVMVVLGNLLADILYAIVDPRVKLGK 317 R+Y V+ ++ A M++L NLL D+LY +V+PR++ K Sbjct: 301 RDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRHKK 339 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.325 0.140 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,204,808 Number of extensions: 979388 Number of successful extensions: 2898 Number of sequences better than 1.0e-05: 197 Number of HSP's gapped: 2639 Number of HSP's successfully gapped: 199 Length of query: 323 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 216 Effective length of database: 26,037,693 Effective search space: 5624141688 Effective search space used: 5624141688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 116 (49.3 bits)