BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0003.p (282 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_appC [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 222 4e-58 BH0030 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 196 4e-50 BH0349 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 192 6e-49 CAC3637 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 188 7e-48 BH3642 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 187 1e-47 >BS_appC [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 303 Score = 222 bits (566), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 122/263 (46%), Positives = 162/263 (61%), Gaps = 7/263 (2%) Query: 3 GLVVLLFFIVIAALAPFLTKYKPEAIDLMFANLKPGVDGHLLGTDELGRDILTRLLYSAR 62 G V+L I+ A AP + Y E L+ PG++ HL+GTD+ GRDI +R+LY AR Sbjct: 42 GAVILFIIIMSAVFAPLIAPYPQEQQSLLDKYKAPGLE-HLMGTDKFGRDIFSRILYGAR 100 Query: 63 ISLMIGXXXXXXXXXXXXXXXXXXXXXXXWVDTVFMRIVDVMNSVPTLFLNILVLAIFGS 122 +SL++G VD V MR+VD++ S+P +FL I ++ IF Sbjct: 101 VSLLVGFASVVGSILIGTVLGALAGYFRGIVDAVIMRVVDIVLSIPDIFLLITLVTIFKP 160 Query: 123 RMEYMIMILALTSWMSIARLVRGNFLQLREMQYVEAAKAIGVSSWGIIFRHLLRNASFPI 182 ++ +I+I LT W + ARLVRG FL LR +YV AAK IG + IIF H+L NA PI Sbjct: 161 GVDKLILIFCLTGWTTTARLVRGEFLSLRSREYVLAAKTIGTKTHKIIFSHILPNALGPI 220 Query: 183 IVNATLMVGGAILSESALSYLGLGIQAPATSWGLMLSNAQEFMLIDPLQA----VYPGLC 238 IV+ATL VG IL+ESALSYLG GIQ P SWG ML +AQ F ++ +QA ++PGL Sbjct: 221 IVSATLKVGSVILAESALSYLGFGIQPPIASWGNMLQDAQNFTVM--IQAWWYPLFPGLF 278 Query: 239 ILLVVLAVNFIGDGIRDGLDPRQ 261 IL+ VL NF+GDG+RD LDP+ Sbjct: 279 ILMTVLCFNFVGDGLRDALDPKN 301 >BH0030 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 301 Score = 196 bits (497), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 103/262 (39%), Positives = 157/262 (59%), Gaps = 1/262 (0%) Query: 1 MSGLVVLLFFIVIAALAPFLTKYKPEAIDLMFANLKPGVDGHLLGTDELGRDILTRLLYS 60 M GL +++FFIV+A + P+ T + P ++M +P + H GTD GRDI TR+++ Sbjct: 40 MVGLSLIIFFIVVALIGPYFTTHDPYEPNVMNKLAEPSAE-HWFGTDHHGRDIFTRIIHG 98 Query: 61 ARISLMIGXXXXXXXXXXXXXXXXXXXXXXXWVDTVFMRIVDVMNSVPTLFLNILVLAIF 120 I+L +G VDTV MRI+DV+ + P + L + +++I Sbjct: 99 MSITLYVGFFSVVLGAIVGVILGVVSGYYGRLVDTVIMRIMDVLLAFPGILLALAIISIL 158 Query: 121 GSRMEYMIMILALTSWMSIARLVRGNFLQLREMQYVEAAKAIGVSSWGIIFRHLLRNASF 180 G + +I+ + + S AR+VRG+ L +R+++Y++A KA+G S IIF+H+L N Sbjct: 159 GGSINNVIIAVGIFSIPVFARIVRGSTLAVRKLEYIDAVKALGASDARIIFKHILPNVLS 218 Query: 181 PIIVNATLMVGGAILSESALSYLGLGIQAPATSWGLMLSNAQEFMLIDPLQAVYPGLCIL 240 PIIV TL + +IL+ SALS+LGLG Q P WG MLS+ + +M P A++PGL I+ Sbjct: 219 PIIVQGTLSIATSILTASALSFLGLGAQPPIPEWGAMLSDGRNYMYDAPHVALFPGLAIV 278 Query: 241 LVVLAVNFIGDGIRDGLDPRQQ 262 +VVLA N GDG+RD LDP+ + Sbjct: 279 VVVLAFNIFGDGLRDALDPKSK 300 >BH0349 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 305 Score = 192 bits (488), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 107/261 (40%), Positives = 156/261 (59%), Gaps = 10/261 (3%) Query: 14 AALAPFLTKYKPEAIDLMFANLKP------GVDGHLLGTDELGRDILTRLLYSARISLMI 67 AA A L + P ++ LKP G H LGTD LGRDI +R++Y +RISL++ Sbjct: 49 AAFADVLAPHNPHEVNPAMM-LKPPAWLDGGSSEHFLGTDHLGRDIWSRMVYGSRISLLV 107 Query: 68 GXXXXXXXXXXXXXXXXXXXXXXXWVDTVFMRIVDVMNSVPTLFLNILVLAIFGSRMEYM 127 G W+DT FMR+VD S+P + L +++L++FG + + Sbjct: 108 GVTAVVLAGLIGVTVGMVAGFYGGWLDTAFMRLVDSFLSIPNILLALVILSVFGPGVWTL 167 Query: 128 IMILALTSWMSIARLVRGNFLQLREMQYVEAAKAIGVSSWGIIFRHLLRNASFPIIVNAT 187 I +L +T+W++ ARLVRG L ++E ++V+AA+AIGV + ++ RHLL N P IV +T Sbjct: 168 IFVLGVTNWVNYARLVRGEVLSIKEREFVKAARAIGVKNRMVMVRHLLPNVVSPFIVIST 227 Query: 188 LMVGGAILSESALSYLGLGIQAPATSWGLMLSNAQEFMLIDPLQAVYPGLCILLVVLAVN 247 L V I+ E++LS+LGLGIQ P SWG +LS+ ++++ A +PGL I L VL + Sbjct: 228 LSVATTIILEASLSFLGLGIQPPDISWGGILSDGRDYIATSWWLATFPGLAITLTVLGII 287 Query: 248 FIGDGIRDGLDPRQQLTKSRR 268 F+GD +RD LDPR Q SRR Sbjct: 288 FLGDWLRDVLDPRGQ---SRR 305 >CAC3637 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 305 Score = 188 bits (478), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 102/260 (39%), Positives = 150/260 (57%), Gaps = 1/260 (0%) Query: 3 GLVVLLFFIVIAALAPFLTKYKPEAIDLMFANLKPGVDGHLLGTDELGRDILTRLLYSAR 62 GLV+++ + + + P +K+ D ANL P HL GTD LGRDILTR++Y R Sbjct: 46 GLVIIIAVTLFSVVGPLFSKFNYYTNDYASANLSPN-SIHLFGTDNLGRDILTRVMYGGR 104 Query: 63 ISLMIGXXXXXXXXXXXXXXXXXXXXXXXWVDTVFMRIVDVMNSVPTLFLNILVLAIFGS 122 ISL I VD + MRIV+ ++S+P + IL++ I G Sbjct: 105 ISLTIALVASVISFVIGIIYGGISGYFGGTVDNIMMRIVEGVSSLPLMIYVILIMVIVGQ 164 Query: 123 RMEYMIMILALTSWMSIARLVRGNFLQLREMQYVEAAKAIGVSSWGIIFRHLLRNASFPI 182 M +I+ +ALT W+ +AR+VRG LQL++ ++V AAK +G SS I+ +HLL N PI Sbjct: 165 GMTSLIIAIALTYWVDMARIVRGQILQLKQEEFVLAAKTLGASSKRILIKHLLPNTMGPI 224 Query: 183 IVNATLMVGGAILSESALSYLGLGIQAPATSWGLMLSNAQEFMLIDPLQAVYPGLCILLV 242 IVN TL + AI +E+ LS++GLG+ AP SWG + SNA + P Q ++P L + + Sbjct: 225 IVNLTLNIPNAIFTEAFLSFVGLGVPAPQASWGTLCSNALGSYQLFPYQLLFPALALCIT 284 Query: 243 VLAVNFIGDGIRDGLDPRQQ 262 + NF+GDG+ LDP+ + Sbjct: 285 MFGFNFLGDGLSTALDPKMR 304 >BH3642 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 306 Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 99/262 (37%), Positives = 152/262 (58%), Gaps = 1/262 (0%) Query: 1 MSGLVVLLFFIVIAALAPFLTKYKPEAIDLMFANLKPGVDGHLLGTDELGRDILTRLLYS 60 M+G+V++ FF+ IA AP LT + + D P + H GTD+LGRD+ TR+ Y Sbjct: 45 MTGIVIVCFFLFIALFAPLLTTHSFDGYDAASRLQSPSAE-HWFGTDDLGRDVFTRIAYG 103 Query: 61 ARISLMIGXXXXXXXXXXXXXXXXXXXXXXXWVDTVFMRIVDVMNSVPTLFLNILVLAIF 120 A++SL +G W+D + RI D+M + P++ L I ++AI Sbjct: 104 AQLSLQVGFFAVAGALLVGTLLGVLAGYYGRWLDMLISRIFDIMLAFPSILLAIAIVAIL 163 Query: 121 GSRMEYMIMILALTSWMSIARLVRGNFLQLREMQYVEAAKAIGVSSWGIIFRHLLRNASF 180 G + ++ +A+ + RLVR + LR +++ AA+A G+ + I+F H+L N+ Sbjct: 164 GPSLHNAMVAIAIVNIPIFGRLVRSKVISLRAEEFIMAARAQGMKNSRILFHHILPNSLS 223 Query: 181 PIIVNATLMVGGAILSESALSYLGLGIQAPATSWGLMLSNAQEFMLIDPLQAVYPGLCIL 240 PIIV ATL G AIL +AL +LGLG QAP WG ML++++ ++ P A++PG+ I+ Sbjct: 224 PIIVQATLGFGTAILEAAALGFLGLGAQAPLAEWGKMLADSRAYIQTAPWVAIFPGMSIM 283 Query: 241 LVVLAVNFIGDGIRDGLDPRQQ 262 LVVL N IGDG+RD LDP+ + Sbjct: 284 LVVLGFNMIGDGLRDALDPKMK 305 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.142 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,958,789 Number of extensions: 672878 Number of successful extensions: 3165 Number of sequences better than 1.0e-05: 238 Number of HSP's gapped: 2833 Number of HSP's successfully gapped: 240 Length of query: 282 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 177 Effective length of database: 26,268,361 Effective search space: 4649499897 Effective search space used: 4649499897 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)