BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0002.p (317 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0028 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel trans... 352 4e-97 STM0501 [O] COG0330 Membrane protease subunits, stomatin/prohibi... 340 1e-93 TM0501 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel trans... 340 1e-93 CAC3182 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel tran... 338 7e-93 FN0399 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel trans... 337 2e-92 >BH0028 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 347 Score = 352 bits (903), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 168/303 (55%), Positives = 228/303 (75%), Gaps = 4/303 (1%) Query: 1 VKATDQISINVDKGQTVCLVGESGSGKSVTSLAIMRLIDYAGGMILEGNINFHGQDLAVK 60 VKA D ++ +V KG+T+ +VGESGSGKS+TSL+I++LI G ++ G INF G++L K Sbjct: 29 VKAVDGVTFSVPKGKTLGIVGESGSGKSITSLSILKLIQEPGK-VVGGEINFKGENLVTK 87 Query: 61 KQEEMRDIRGNRIAMIFQDPMSSLNPVFTVGEQIAESLQLHQQKSPKEAMQMAIDLLKLV 120 + MR IRGN I+MIFQ+PM+SLNPV+TVG+QI+ES ++H++ KEA++ ++D+LKLV Sbjct: 88 NEAYMRKIRGNEISMIFQEPMTSLNPVYTVGQQISESFRIHEKLGKKEALKRSVDMLKLV 147 Query: 121 GIPAPEIRARQYPHELSGGMCQRIVIAIALACNPELLIADEPTTALDVTVQAQILDLLRK 180 GIP+PE R QYPHELSGGM QR++IA+ALACNPELLIADEPTTALDVT+QAQIL+L++ Sbjct: 148 GIPSPEKRVHQYPHELSGGMRQRVMIAMALACNPELLIADEPTTALDVTIQAQILELMKD 207 Query: 181 LQAELGMSVLLITHDMGVAAEIADRIAVMYAGAIVEEGTVEEIFDHPSHPYTIGLLQSIP 240 LQ LGMS+++ITHD+GV AE D +AVMY G +VE V+ +F +P HPYT+GLL S+P Sbjct: 208 LQDRLGMSIIMITHDLGVVAETCDYVAVMYCGKVVEYADVKTLFKNPRHPYTVGLLNSLP 267 Query: 241 GFE-GGRGGELYTIKGTIPPIGQLPPGCRFHPRCPHAMEVCSMKEPPDFMITED-HRTAC 298 + EL IKG +P +P GCRF PRCP A ++C + PD E+ ++ C Sbjct: 268 RHDIDLEDEELSVIKGNVPSPADMPEGCRFAPRCPFASDICK-ERLPDLETDENGNQIRC 326 Query: 299 WLF 301 W++ Sbjct: 327 WVY 329 >STM0501 [O] COG0330 Membrane protease subunits, stomatin/prohibitin homologs Length = 305 Score = 340 bits (873), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 0/303 (0%), Positives = 0/303 (0%), Gaps = 3/303 (0%) Query: 1 VKATDQISINVDKGQTVCLVGESGSGKSVTSLAIMRLIDYAGGMILEGNINFHGQDLAVK 60 + + TV G ++ +D G + Sbjct: 15 IVGAGVKIVPQGYQWTVERFGRYTKTLQPGLSLVVPFMD-RIGRKINMMEQVLDIPSQEV 73 Query: 61 KQEEMRDIRGNRIAMIFQDPMSSLNPVFTVGEQIAESLQLHQQKSPKEAMQMAIDLLKLV 120 ++ ++ + + I + E +L + ++ +M++ L + Sbjct: 74 ISKDNANVTIDAVCFIQVIDAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRD 133 Query: 121 GIPAPEIRARQYPHELSGGMCQRIVIAIALACNPELLIADEPTTALDVTVQAQILDLLRK 180 I + G RI I + + A + + Sbjct: 134 SINTRLLHIVDEATNPWGIKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGVR 193 Query: 181 LQAELGMSVLLITHDMGVAAEIADRIAVMYAGAIVEEGTVEEIFDHPSHPYTIGLLQSIP 240 L + + E A E + Sbjct: 194 QAEILKAEGEKQSQILKAEGERQSAFLQAEARERSAEAEARATQMVSEAIAAGDIQAINY 253 Query: 241 GFEGGRGGELYTIKGTIPPIGQLPPGCRFHPRCPHAME-VCSMKEPPDFMITEDHRTACW 299 E G+ + Sbjct: 254 FVAQKY-TEALQQIGSANNSKVVMMPLDASSLMGAIAGI 312 Query: 300 LFQ 302 Sbjct: 313 315 >TM0501 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 327 Score = 340 bits (873), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 170/303 (56%), Positives = 223/303 (73%), Gaps = 3/303 (0%) Query: 1 VKATDQISINVDKGQTVCLVGESGSGKSVTSLAIMRLIDYAGGMILEGNINFHGQDLAVK 60 VKA D +S V +G+T+ +VGESGSGKSVTSL+IMRL+D G I++G I F G++L Sbjct: 15 VKAVDGVSFEVREGETLGIVGESGSGKSVTSLSIMRLLD-QNGKIVDGKIIFKGRNLLEL 73 Query: 61 KQEEMRDIRGNRIAMIFQDPMSSLNPVFTVGEQIAESLQLHQQKSPKEAMQMAIDLLKLV 120 + EMR IRG IAMIFQ+PM +LNPVFT+G+QI E++ LHQ S KEA +MAIDLL+ V Sbjct: 74 SENEMRKIRGKEIAMIFQEPMVALNPVFTIGDQIMEAIILHQNVSEKEARKMAIDLLRKV 133 Query: 121 GIPAPEIRARQYPHELSGGMCQRIVIAIALACNPELLIADEPTTALDVTVQAQILDLLRK 180 GIP PE R +YPH+LSGGM QR +IA+AL+C P LLIADEPTTALDVT+QAQIL+L+++ Sbjct: 134 GIPEPEKRVDEYPHQLSGGMRQRAMIAMALSCRPSLLIADEPTTALDVTIQAQILELMKE 193 Query: 181 LQAELGMSVLLITHDMGVAAEIADRIAVMYAGAIVEEGTVEEIFDHPSHPYTIGLLQSIP 240 LQ E GM+++LITHDMGV AE++D++AVMYAG +VE G V+ IF P HPYT LL+SIP Sbjct: 194 LQKEYGMAIILITHDMGVVAEMSDKVAVMYAGKVVEYGDVKTIFTEPKHPYTYALLESIP 253 Query: 241 GFEGGRGGELYTIKGTIPPIGQLPPGCRFHPRCPHAME-VCSMKEPPDFMITEDHRTACW 299 + + L +I G +P PPGC+FHPRC + C ++EP + +H+ C+ Sbjct: 254 RIDVEQ-ERLKSIPGNVPDPLNFPPGCKFHPRCEFFEKGKCDVEEPELEDLDGNHKVRCF 312 Query: 300 LFQ 302 +Q Sbjct: 313 FWQ 315 >CAC3182 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 324 Score = 338 bits (867), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 164/303 (54%), Positives = 217/303 (71%), Gaps = 3/303 (0%) Query: 2 KATDQISINVDKGQTVCLVGESGSGKSVTSLAIMRLIDYAGGMILEGNINFHGQDLAVKK 61 KA D IS +V KG+TVC+VGESG GKSVTSL+IM LI+ G I+ G I + DL Sbjct: 23 KAVDNISFSVKKGETVCIVGESGCGKSVTSLSIMGLIN-EPGRIINGEILYKNNDLLKLS 81 Query: 62 QEEMRDIRGNRIAMIFQDPMSSLNPVFTVGEQIAESLQLHQQKSPKEAMQMAIDLLKLVG 121 + +++ +RG I+MIFQ+PM+SLNPVFT+G QI E L H+ + EA + AI L+ VG Sbjct: 82 KSDLQKLRGKEISMIFQEPMTSLNPVFTIGHQITEILLEHELINKDEAYKKAIRLINSVG 141 Query: 122 IPAPEIRARQYPHELSGGMCQRIVIAIALACNPELLIADEPTTALDVTVQAQILDLLRKL 181 +P E + YPH+LSGGM QRI+IA+AL+ NP+LLIADEPTTALDVT+QAQILDLL+KL Sbjct: 142 LPRAEEIMKSYPHKLSGGMLQRIIIAMALSSNPKLLIADEPTTALDVTIQAQILDLLKKL 201 Query: 182 QAELGMSVLLITHDMGVAAEIADRIAVMYAGAIVEEGTVEEIFDHPSHPYTIGLLQSIPG 241 ++ L S+L ITHD+GV AEIAD + VMYAG I+EE V E+F +P HPYT GLL S P Sbjct: 202 KSTLNTSILFITHDLGVVAEIADYVIVMYAGKIIEEAPVIELFKNPKHPYTQGLLNSKPI 261 Query: 242 FEGGRGGELYTIKGTIPPIGQLPPGCRFHPRCPHAMEVCSMKEPPDFMITEDHRTACWLF 301 G +LY+IKG++P + +L C FH RC H ++C+ K+ P F + +H+TACWL+ Sbjct: 262 I-GKHRDKLYSIKGSVPDLSKLNESCYFHDRCEHCKDICT-KKSPAFTVNNNHKTACWLY 319 Query: 302 QGK 304 + + Sbjct: 320 ERR 322 >FN0399 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 335 Score = 337 bits (863), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 162/303 (53%), Positives = 222/303 (73%), Gaps = 3/303 (0%) Query: 1 VKATDQISINVDKGQTVCLVGESGSGKSVTSLAIMRLIDYAGGMILEGNINFHGQDLAVK 60 V A + IS+++ +G+T+ LVGE+G+GK+ T+L IMRLI G I G I F+G+ + Sbjct: 23 VHAVNGISVDIAEGETLGLVGETGAGKTTTALGIMRLITGPTGKIKSGAIKFNGKSILEI 82 Query: 61 KQEEMRDIRGNRIAMIFQDPMSSLNPVFTVGEQIAESLQLHQQKSPKEAMQMAIDLLKLV 120 +EEMR IRGN I+MIFQDPM+SLNPV TVGEQIAE +++H+ +EAM A ++L+LV Sbjct: 83 PEEEMRKIRGNDISMIFQDPMTSLNPVMTVGEQIAEVIEIHEHIGKEEAMNKAAEMLELV 142 Query: 121 GIPAPEIRARQYPHELSGGMCQRIVIAIALACNPELLIADEPTTALDVTVQAQILDLLRK 180 GIP R +PH+ SGGM QR+VIAIALACNP+LLIADEPTTALDVT+QAQ+LDL+ Sbjct: 143 GIPGA--RKNDFPHQFSGGMKQRVVIAIALACNPKLLIADEPTTALDVTIQAQVLDLMTD 200 Query: 181 LQAELGMSVLLITHDMGVAAEIADRIAVMYAGAIVEEGTVEEIFDHPSHPYTIGLLQSIP 240 L+ + S+LLITHD+GV A++ D++A+MYAG IVE GT+E++F++P HPYT+GL SIP Sbjct: 201 LKNKFKTSMLLITHDLGVVAQVCDKVAIMYAGEIVEYGTLEDVFENPKHPYTLGLFGSIP 260 Query: 241 GFEGGRGGELYTIKGTIPPIGQLPPGCRFHPRCPHAMEVCSMKEPPDFMITEDHRTACWL 300 + + L IKG +P LP GC+F+PRCPHA+E+CS + P + + H+ C + Sbjct: 261 SLDEEK-TRLVPIKGLMPDPTNLPSGCKFNPRCPHAVELCSQRAPVVTEVLKGHKVQCLI 319 Query: 301 FQG 303 +G Sbjct: 320 AEG 322 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,640,548 Number of extensions: 1091369 Number of successful extensions: 8924 Number of sequences better than 1.0e-05: 1971 Number of HSP's gapped: 6268 Number of HSP's successfully gapped: 2147 Length of query: 317 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 211 Effective length of database: 26,153,027 Effective search space: 5518288697 Effective search space used: 5518288697 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)