BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0342.0001.p (339 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0351 [E] COG4608 ABC-type oligopeptide transport system, ATPas... 395 e-110 CAC0180 [E] COG4608 ABC-type oligopeptide transport system, ATPa... 384 e-107 BS_appF [E] COG4608 ABC-type oligopeptide transport system, ATPa... 382 e-106 BH0027 [E] COG4608 ABC-type oligopeptide transport system, ATPas... 382 e-106 BH3645 [E] COG4608 ABC-type oligopeptide transport system, ATPas... 366 e-101 >BH0351 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 332 Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust. Identities = 186/319 (58%), Positives = 239/319 (74%), Gaps = 2/319 (0%) Query: 23 KDIRKYFPITKGLLNRTVGQVKAVDGVSLSIRRGETFGLVGESGCGKSTFGRVLLRLQSA 82 K + K+F +++G R ++AVDGV L+I GET G+VGESGCGKST G++L+RL Sbjct: 9 KGLTKHFDVSEGFFKRKKAVLRAVDGVDLTIYAGETLGIVGESGCGKSTLGQLLMRLLEP 68 Query: 83 TGGEVLFCGRDIHSLRHQELRKLREEMQIIFQDPFGSLNPRFLVKDIIGEPLKIHRSMSA 142 T G + F G D +L+ + LR+ R ++QIIFQDPF SLNPR V++IIGEPLK HR Sbjct: 69 TRGTLSFAGSDFLALKGEALRQKRSDIQIIFQDPFSSLNPRMTVREIIGEPLKTHRLAKG 128 Query: 143 KEIDARVVELMELVGLDATRRNRYPHEFSGGQRQRIGIARAIALNPQFIVADEAVSALDV 202 ++ RV ELM+ VGLD + RYPHEFSGGQRQRIGIARAIAL P+ I+ DE VSALDV Sbjct: 129 NDLIKRVDELMDAVGLDRSYAKRYPHEFSGGQRQRIGIARAIALKPKLIICDEPVSALDV 188 Query: 203 SVQSQVINLLMKLQKELGLTFLFIAHGLNVVRHISDRVGVMYLGKLVEVAETEALFAAPL 262 S+Q+Q++NL+++LQKE LTFLFIAHGL V+HISDR+ VMYLGK+VE+A +ALFA P+ Sbjct: 189 SIQAQILNLMVRLQKEFQLTFLFIAHGLPAVKHISDRMAVMYLGKVVELASKDALFAQPM 248 Query: 263 HPYTAALLSAIPKPTPRRKHDR--IVLQGDVPSPANPPSGCRFHTRCPLAQEKCRQQEPL 320 HPY+ L+ A+P P P ++D+ + L+GD+PSP +PPSGCRFH RCP AQ+KC QEP Sbjct: 249 HPYSEGLIQAVPIPDPTVRNDKKWVTLEGDLPSPVHPPSGCRFHPRCPYAQDKCTVQEPA 308 Query: 321 LEELQPGRRVACHFPLASS 339 L E +PG VACHFPL + Sbjct: 309 LTEKEPGHFVACHFPLEKT 327 >CAC0180 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 321 Score = 384 bits (987), Expect = e-107, Method: Compositional matrix adjust. Identities = 182/311 (58%), Positives = 230/311 (73%) Query: 23 KDIRKYFPITKGLLNRTVGQVKAVDGVSLSIRRGETFGLVGESGCGKSTFGRVLLRLQSA 82 ++++KYFPI G +T G VK+VD VS I E GLVGESGCGK+T GR LLRL Sbjct: 9 RNLKKYFPIKTGFFRKTTGYVKSVDDVSFDIAENEIMGLVGESGCGKTTTGRTLLRLMEK 68 Query: 83 TGGEVLFCGRDIHSLRHQELRKLREEMQIIFQDPFGSLNPRFLVKDIIGEPLKIHRSMSA 142 T GEVL+ G+D+ SL + LR LR E+Q+IFQDP+ SLNPR V +I+GE L H+ + Sbjct: 69 TEGEVLYRGKDLFSLNKKSLRNLRPEIQMIFQDPYSSLNPRMTVGEIVGEALLDHKLCTK 128 Query: 143 KEIDARVVELMELVGLDATRRNRYPHEFSGGQRQRIGIARAIALNPQFIVADEAVSALDV 202 E++ +V E++ GL + R+PHEFSGGQRQRIGIARA+ LNP+FIVADE VSALDV Sbjct: 129 SEVNYKVEEMITACGLASYHMRRFPHEFSGGQRQRIGIARALILNPKFIVADEPVSALDV 188 Query: 203 SVQSQVINLLMKLQKELGLTFLFIAHGLNVVRHISDRVGVMYLGKLVEVAETEALFAAPL 262 S+Q+QVINLL +LQK+ G + LFI+H L+VV+HI ++GVMYLG +VE+A E LF PL Sbjct: 189 SIQAQVINLLAELQKKKGFSCLFISHDLSVVQHICQKIGVMYLGSMVELAGNEELFTNPL 248 Query: 263 HPYTAALLSAIPKPTPRRKHDRIVLQGDVPSPANPPSGCRFHTRCPLAQEKCRQQEPLLE 322 HPYT ALLSAIP P P K +RI+L+GD+PSPANPPSGC+FHTRC A EKC ++ P + Sbjct: 249 HPYTKALLSAIPIPDPTLKRNRIILKGDIPSPANPPSGCKFHTRCNYATEKCSKEVPEYK 308 Query: 323 ELQPGRRVACH 333 E+ G VACH Sbjct: 309 EVIKGHFVACH 319 >BS_appF [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 329 Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust. Identities = 183/315 (58%), Positives = 236/315 (74%), Gaps = 3/315 (0%) Query: 23 KDIRKYFPITKGLLNRTVGQVKAVDGVSLSIRRGETFGLVGESGCGKSTFGRVLLRLQSA 82 +D++KYFPI GL R VG VKAVDGVS S+++GET G+VGESGCGKST GR ++RL Sbjct: 13 RDVKKYFPIRSGLFQRKVGDVKAVDGVSFSLKKGETLGIVGESGCGKSTAGRTMIRLYKP 72 Query: 83 TGGEVLFCGRDIHSLRHQELRK-LREEMQIIFQDPFGSLNPRFLVKDIIGEPLKIHRSMS 141 T G++LF G+DI +L ++LRK +R+ +Q++FQDPF SLNPR ++ II EP H + Sbjct: 73 TEGQILFKGQDISNLSEEKLRKSVRKNIQMVFQDPFASLNPRKTLRSIIKEPFNTHNMYT 132 Query: 142 AKEIDARVVELMELVGLDATRRNRYPHEFSGGQRQRIGIARAIALNPQFIVADEAVSALD 201 +E + +V EL+ VGL + RYPHEFSGGQRQRIGIARA+ LNP+ I+ADE VSALD Sbjct: 133 MRERNEKVEELLARVGLHPSFAGRYPHEFSGGQRQRIGIARALTLNPELIIADEPVSALD 192 Query: 202 VSVQSQVINLLMKLQKELGLTFLFIAHGLNVVRHISDRVGVMYLGKLVEVAETEALFAAP 261 VS+Q QVINL+ +LQ+E LT+LFI+H L+VVRHISDRVGVMYLGK++E+ L+ P Sbjct: 193 VSIQPQVINLMEELQEEFNLTYLFISHDLSVVRHISDRVGVMYLGKMMELTGKHELYDNP 252 Query: 262 LHPYTAALLSAIPKPTPRR--KHDRIVLQGDVPSPANPPSGCRFHTRCPLAQEKCRQQEP 319 LHPYT ALLS++P R K +RIVL+G++PSPANPP GC FHTRCP+A+ C++Q P Sbjct: 253 LHPYTQALLSSVPVTRKRGSVKRERIVLKGELPSPANPPKGCVFHTRCPVAKPICKEQIP 312 Query: 320 LLEELQPGRRVACHF 334 +E P VACH Sbjct: 313 EFKEAAPSHFVACHL 327 >BH0027 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 338 Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust. Identities = 179/313 (57%), Positives = 238/313 (76%), Gaps = 3/313 (0%) Query: 25 IRKYFPITKGLLNRTVGQVKAVDGVSLSIRRGETFGLVGESGCGKSTFGRVLLRLQSATG 84 +++YFPI G+L RTV VKAVD VS +I GET +VGESGCGKST GR +LRL T Sbjct: 11 LKQYFPIKGGILGRTVNHVKAVDDVSFTIYEGETVSIVGESGCGKSTTGRAILRLDEPTD 70 Query: 85 GEVLFCGRDIHSLRHQELRKLREEMQIIFQDPFGSLNPRFLVKDIIGEPLKIHRSMSAKE 144 G++ F G D+ SL +E+RK R+++QIIFQDP+ S+NPR ++ ++ E ++I + + + Sbjct: 71 GKIEFQGEDLLSLNKREMRKKRKDLQIIFQDPYASINPRQTIRQVLEEAMEIQKVVPRDK 130 Query: 145 IDARVVELMELVGLDATRRNRYPHEFSGGQRQRIGIARAIALNPQFIVADEAVSALDVSV 204 R+ ELM+ VGL + + +R+PHEFSGGQRQRIGIARA+++NP+ IV DEAVSALDVS+ Sbjct: 131 RGERIRELMDTVGLGSHQADRFPHEFSGGQRQRIGIARALSVNPKLIVCDEAVSALDVSI 190 Query: 205 QSQVINLLMKLQKELGLTFLFIAHGLNVVRHISDRVGVMYLGKLVEVAETEALFAAPLHP 264 Q+QVINLL +LQ+E LT+LFI+H L VVRHISDRV VMYLG++VE+A+ +LF P HP Sbjct: 191 QAQVINLLKRLQREFKLTYLFISHDLGVVRHISDRVIVMYLGRIVEIADKTSLFENPQHP 250 Query: 265 YTAALLSAIPKPTPRRKHDRIVLQGDVPSPANPPSGCRFHTRCPLAQEKCRQQEPLL--- 321 YT ALLSAIP P P +K +RI+L+GDVPSP +PP+GCRFHTRCP A +KCR + P L Sbjct: 251 YTKALLSAIPVPDPEKKKERIILKGDVPSPIDPPNGCRFHTRCPFATDKCRTETPELRTA 310 Query: 322 EELQPGRRVACHF 334 + ++ G ACH+ Sbjct: 311 DYMKDGHLAACHY 323 >BH3645 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 322 Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust. Identities = 172/312 (55%), Positives = 226/312 (72%) Query: 23 KDIRKYFPITKGLLNRTVGQVKAVDGVSLSIRRGETFGLVGESGCGKSTFGRVLLRLQSA 82 K++ K F I G +R VG+V+AVD +S S+ GE G+VGESGCGKST G+ +LRL Sbjct: 9 KNLTKSFDINGGFFSRKVGEVRAVDNLSFSVYEGEVLGIVGESGCGKSTTGKAILRLIEP 68 Query: 83 TGGEVLFCGRDIHSLRHQELRKLREEMQIIFQDPFGSLNPRFLVKDIIGEPLKIHRSMSA 142 + GEV F G +I +L ++RK R +MQIIFQDP+ SLNPR ++ II EPL +H+ + Sbjct: 69 SSGEVYFAGTEITALSEGDMRKRRRDMQIIFQDPYASLNPRHTIEKIIREPLIVHQIGTK 128 Query: 143 KEIDARVVELMELVGLDATRRNRYPHEFSGGQRQRIGIARAIALNPQFIVADEAVSALDV 202 KE RV EL+E VGL + RYPH+FSGGQRQRIGIARA+A++P+ ++ DE VSALDV Sbjct: 129 KEQLERVEELLETVGLSSDHATRYPHQFSGGQRQRIGIARALAVHPKLVICDEPVSALDV 188 Query: 203 SVQSQVINLLMKLQKELGLTFLFIAHGLNVVRHISDRVGVMYLGKLVEVAETEALFAAPL 262 SVQSQ++NL+ L++ LT++FIAH L+VV+HISDRV VMYLG++VE+A + LF P Sbjct: 189 SVQSQILNLMADLKETFALTYIFIAHDLSVVKHISDRVAVMYLGRMVEMATKDQLFENPK 248 Query: 263 HPYTAALLSAIPKPTPRRKHDRIVLQGDVPSPANPPSGCRFHTRCPLAQEKCRQQEPLLE 322 HPYT ALLSA+P P P ++I+L+GDVPSP+NPP GC FHTRCP + C+ + P L Sbjct: 249 HPYTRALLSAVPVPDPDAAKEKILLKGDVPSPSNPPEGCAFHTRCPDCMDVCKIKRPSLH 308 Query: 323 ELQPGRRVACHF 334 E + G VACH Sbjct: 309 EKEKGHYVACHL 320 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,548,924 Number of extensions: 988808 Number of successful extensions: 8474 Number of sequences better than 1.0e-05: 2025 Number of HSP's gapped: 5749 Number of HSP's successfully gapped: 2162 Length of query: 339 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 232 Effective length of database: 26,037,693 Effective search space: 6040744776 Effective search space used: 6040744776 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 116 (49.3 bits)