BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0341.0038.p (439 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0220 [G] COG1653 ABC-type sugar transport system, periplasmic... 117 3e-26 PH0753 [G] COG1653 ABC-type sugar transport system, periplasmic ... 88 3e-17 AGc4552 [G] COG1653 ABC-type sugar transport system, periplasmic... 81 4e-15 all1027 [G] COG1653 ABC-type sugar transport system, periplasmic... 81 4e-15 TVN1143 [G] COG1653 ABC-type sugar transport system, periplasmic... 80 6e-15 >lin0220 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 418 Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 99/384 (25%), Positives = 170/384 (44%), Gaps = 27/384 (7%) Query: 66 ESLIGKFEQLHPGTEVEIMTIPFADYQQKLSIMLASRTAPDAGWLAERMIPQLLESGQLV 125 + ++ +FE+ +P +V + TI F DY KL +A APDA L Q E G L Sbjct: 48 DKMVKEFEKQNPDIKVNVQTIAFNDYFTKLQTQIAGGDAPDAFELNYETFMQYAEKGVLA 107 Query: 126 DIAAEVKDDPGYNYPDIYPSTLDIFNRGGSLYGIPFSTPPVLIYYNKDLFRSKGLKTPTE 185 D+ + ++ D ++ + D F G YG+ S V+ YNKDLF G++ PT Sbjct: 108 DLTSYIEKDKDFDPSTLNKQAYDAFKYDGKQYGMVESFSNVVTIYNKDLFDKAGVEYPT- 166 Query: 186 LYKEGHWNYDEFLKAARSITNPQQGIYGVKLVRDWNNWSDALLPLFWSHGAELFDSDGSA 245 W + + AA+ +T+ + ++G N + +G +FD D + Sbjct: 167 ----ADWTWKDEEAAAKKLTDAKNKVWGTSQPVTMNE----FFKVAAQNGGSIFDKDMTK 218 Query: 246 FALNSPEGREALQLYSDLMFKDKVHPLPGD------ELSFDSGQIGM-YTDRYSYTSKAR 298 +NSPE EAL ++ + + KV P P D E F +GQI M +T + + Sbjct: 219 TTINSPENVEALTHLTNEVTESKVAPSPSDLSGQLPEDLFMNGQIAMLHTGIWLFDMFQD 278 Query: 299 AVTDFEWDIAPMPAGIKGTGTSLGYAGVSVFETRHPAEAA-EFLKFITS---AESMSVTA 354 A F+WD+ + AG K T G+ V + EAA +F F+++ A + + Sbjct: 279 AP--FKWDVQ-VEAGNKQKATHFFANGIGVSKDSDKKEAAFKFASFMSANKEAAKIRIAN 335 Query: 355 QYFVPSRKSVLESDVFLRAAAKPSPESIQLAVLDQMADARIAPGHKNWQQIDTKIQMLLD 414 + +P+ E+ L+ +P + AV + + + P K+W +I + Sbjct: 336 NWELPA----TENKEILQPYLDATPPDNREAVFESLQYMVLPPVVKDWNKISDYTNSEFE 391 Query: 415 ELYTQSATANEVLGKMEVEVNRLM 438 ++ +T + L E +N+ M Sbjct: 392 KVLNGESTPEKALKNSEDNINKTM 415 >PH0753 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 464 Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 95/351 (27%), Positives = 156/351 (44%), Gaps = 44/351 (12%) Query: 46 QEPVKLKFSIW-GNDAQKAMYESLIGKFEQLHPGTEVEIMTIPFADYQQKLSIMLASRTA 104 Q V ++F+ W + + Y+ +I FE+ +P +V+ I + + + + A Sbjct: 65 QNQVFIRFAGWSAGETEMKNYQRMIELFEKENPNIKVKYEVIT-QMFHENILASFGAGVA 123 Query: 105 PDAGWLAERMIPQLLESGQLVDIAAEVKDDPGYNYPDIYPSTLDIFNRGGSLYGIPFSTP 164 PD ++ P +E G L I+ E+ D+ N YP L+ F + G LYG+P Sbjct: 124 PDVFYVDSSWAPIFIEKGALYPIS-ELADESFIN--KFYPFLLEPFKKNGKLYGLPKDWS 180 Query: 165 PVLIYYNKDLFRSKGLKTPTELYKEGHWNYDEFLKAARSITNPQQGIYGVKLVRDWNNWS 224 + ++YNK LF GL P E +DE L+ A+ IT + G G+ + N Sbjct: 181 MLALFYNKKLFEQAGLTKPPE-------TWDELLEYAKIITE-KTGKPGLAIYLGGFN-- 230 Query: 225 DALLPLFWSHGA--ELFDSDGSAFALNSPEGREALQLYSDLMFKDKVHP----LPGDELS 278 +P+ S+GA F+ A ++P RE L Y +L K KV LP ++ Sbjct: 231 -RYVPVAVSNGAPKPWFEKPEDASWFDNPVVRETLTWYINLYRKGKVEREKKGLPPYVVA 289 Query: 279 FDSGQIGMYTDRYSYTSKARAVT-------------DF----EWDIAPMPAGIKGTGTSL 321 + G D + A ++ +F +WDIAP+PAG G T + Sbjct: 290 PEDVGAGWLGDAFGQQKVAMVISGNWMIPFLADQFPNFKYGEDWDIAPLPAGKNGRVTMV 349 Query: 322 GYAGVSV-FETRHPAEAAEFLKFI---TSAESMSVTAQYFVPSRKSVLESD 368 + + +T+HP EA +F++FI + + V A +PS K E+D Sbjct: 350 YTVILGINSKTKHPKEAWKFVEFILGPRGQKELVVKAGQTLPSMKG-FEND 399 >AGc4552 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 443 Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 95/327 (29%), Positives = 147/327 (44%), Gaps = 49/327 (14%) Query: 69 IGKFEQLHPGTEVEIMTIPFADYQQKLSIMLAS-RTAPDAGWLAERMIPQLLESGQ-LVD 126 +G+FE+L G +V P +QK+ I L+S + + D L+ + + E G+ L D Sbjct: 62 LGEFEELT-GIKVNAEATPEQQQRQKVVIELSSGKPSFDVVHLSYHVQKRQFEKGKWLAD 120 Query: 127 IAAEVKD----DPGYNYPDIYPSTLDIFNRG--GSLYGIPFSTPPVLIYYNKDLFRSKGL 180 I+ +KD DP D + + +F + G L +PFS ++Y+NK+LF +KGL Sbjct: 121 ISGFLKDPSLTDPSLVEKDFAEAGM-LFAKDSDGVLRSLPFSVDYWIVYWNKELFEAKGL 179 Query: 181 KTPTELYKEGHWNYDEFLKAARSITNPQQGIYGVKLVRDWNN-----WSDALLPLFWSHG 235 K P ++E + AA IT+P YG + R N W+ +L +G Sbjct: 180 KYPE--------TFEELVTAAEKITDPATNTYGF-VARGLKNANTPVWTSLML----GYG 226 Query: 236 AELFDSDGSAFALNSPEGREALQLYSDLMFKDKVHPLPG-----DELSFDSGQIGMYTDR 290 A+ +DG S E EA +LY LM K + G + +F G+IGM+ D Sbjct: 227 AKPISADGK-IDTESKEAVEAAKLYQRLMTKAAPPGVSGFNWAEAQSAFLQGKIGMWFDG 285 Query: 291 YSYT------SKARAVTDFEWDIAPMPAGIKGTGTSLGYAGVSVFETRHPAEAAEFLKFI 344 + K+R V + + P ++ GT G G+ V E EAA F Sbjct: 286 VGFAPPIENPEKSRVVGKVGYGVMPKGPAVQAAGT-FG-DGLGVVEASSKKEAAYL--FC 341 Query: 345 TSAESMSVTAQYF-----VPSRKSVLE 366 A S + A+ VP R+S+LE Sbjct: 342 QWAISHDMGARLLQAGAGVPFRQSILE 368 >all1027 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 432 Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 99/367 (26%), Positives = 157/367 (42%), Gaps = 44/367 (11%) Query: 65 YESLIGKFEQLHPGTEVEIMTIPFADYQQKLSIMLASRTAPDAGWLAERMIPQLLESGQL 124 ++SLI FE +PG +V + +P+A + K+ ++++T PD L QL Sbjct: 60 FQSLIANFETQNPGIKVNWVDVPWAAMENKILTAVSAKTPPDVVNLNPDFASQLAGRNAW 119 Query: 125 VDIAAEVKDDPGYNY-PDIY-PSTLDIFNRGGSLYGIPFSTPPVLIYYNKDLFRSKGLKT 182 +D+ +V + +Y P+I+ STL+ G +G+P+ L YN DL + G+ Sbjct: 120 LDLDTKVPQEARSSYLPNIWKASTLN-----GKSFGVPWYLTTRLTIYNTDLLKQAGISK 174 Query: 183 PTELYKEGHWNYDEFLKAARSITNPQQGIYG--VKLV-RDWNNWSDALLPLFWSHGAELF 239 P Y E +AA+ I + + G Y V V +D S +L F GA L Sbjct: 175 PPATYA-------ELAQAAQQIKD-KTGKYAFFVTFVPQD----SGEVLQSFVQMGATLV 222 Query: 240 DSDGSAFALNSPEGREALQLYSDLMFKDKVHPLPGDELS---------FDSGQIGMYTDR 290 D++G A A NSP+G+ A Q + DL K LP + L+ + SG+ Sbjct: 223 DTEGKA-AFNSPQGKAAFQYWVDLY---KKGLLPKEALTQGHRHAIDLYQSGETAFLASG 278 Query: 291 YSY----TSKARAVTDFEWDIAPMPAGIKGTGTSLGYAGVSVFETRHPAEAAEFLKFITS 346 + T+ A V IAP G G V +T+ P A +F F+T+ Sbjct: 279 PEFLKTITTNAPKVAQAS-AIAPQLTGDTGKKNVAVMNIVVPRDTKQPDAAVKFALFVTN 337 Query: 347 AESMSVTAQY--FVPSRKSVLESDVFLRAAAKPSP-ESIQLAVLDQMADARI-APGHKNW 402 E+ A+ +PS L F A S E ++ Q+ A I P K+ Sbjct: 338 DENQLAFAKAANVLPSTTKALADSYFKDIPADASTVEKARVVSAQQLQQAEILTPALKDI 397 Query: 403 QQIDTKI 409 +++ I Sbjct: 398 KKLQKAI 404 >TVN1143 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 440 Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 82/359 (22%), Positives = 155/359 (43%), Gaps = 63/359 (17%) Query: 51 LKFSIWGNDAQKAMYE-SLIGKFEQLHPGTEVEIMTIPFADYQQKLSIMLASRTAPDAGW 109 + FS W + ++ ++ ++ +F +H V+ + I ++Y L L+S + P + Sbjct: 37 ITFSGWVSSGEEYTFDVQMVNEFNSIHSNVSVKFVPIT-SNYYGTLETELSSNSGPAVFY 95 Query: 110 LAERMIPQLLESGQLVDIAAEVKDDPGYNYPDIYPSTLDIFNRGGSLYGIPFSTPPVLIY 169 + ++P+ +++G L+D+ + + YN P LD F + G LY P P+L+ Sbjct: 96 MENDILPEFVKAGYLLDLTPALSANSTYNLSGFVPEILDTFMQHGQLYAAPKDWSPLLVL 155 Query: 170 YNKDLFRSKGLKTPTELYKEGHW----NYDEFLKAARS-ITNPQQGIY----GVKLVRDW 220 +NK++F ++ + PT Y +W N E LKA S + N +G Y G + R Sbjct: 156 FNKNIFNAEHVPYPTN-YTNWNWTAMKNTLELLKANESKLPNGGKGYYPMVEGPQFAR-- 212 Query: 221 NNWSDALLPLFWSHGAELFDSDGSAFALNSPEGREALQLYSDLMFKDKVHPLPGDELS-- 278 +L G + +S G+ + NS A++ + L + + L + + Sbjct: 213 ------ILAFMHEAGGQWINSSGTGASSNSAGLLTAIKFWYGL-YSSGLSGLNSNLSAGW 265 Query: 279 ----FDSGQIGMYTDRYSYTSKARAVTDFEWDIAPMPAG---IKGTGTSLGYA------- 324 F SG++GM V W + + A K +S+GYA Sbjct: 266 NGGDFASGKVGM-------------VVTGTWTVPVLFANGSYFKNDTSSIGYAFMPYDVQ 312 Query: 325 --------GVSVFETRHPAE---AAEFLKFIT--SAESMSVTAQYFVPSRKSVLESDVF 370 G+++ +P + A +F++F T S E V+ +PSR ++L+S + Sbjct: 313 NATMMFNVGLAINSHLNPTQKWIAEQFVEFFTGPSGEKTWVSKGLALPSRSAILDSSWY 371 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.134 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 32,769,500 Number of extensions: 1306178 Number of successful extensions: 4247 Number of sequences better than 1.0e-05: 48 Number of HSP's gapped: 4224 Number of HSP's successfully gapped: 48 Length of query: 439 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 330 Effective length of database: 25,807,025 Effective search space: 8516318250 Effective search space used: 8516318250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 117 (49.7 bits)