BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0341.0024.p (296 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1896 [G] COG1175 ABC-type sugar transport systems, permease co... 158 1e-38 slr1202 [G] COG1175 ABC-type sugar transport systems, permease c... 140 2e-33 CAC3671 [G] COG1175 ABC-type sugar transport systems, permease c... 137 2e-32 Rv2040c [G] COG1175 ABC-type sugar transport systems, permease c... 135 1e-31 MT2100 [G] COG1175 ABC-type sugar transport systems, permease co... 135 1e-31 >SP1896 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 97/294 (32%), Positives = 157/294 (53%), Gaps = 6/294 (2%) Query: 1 MLKTLGRRWREKLDFGLFTLPVLICIAVAFYIPFVMTIRYSMTKWNGISKHPKFVGLDNF 60 M K L + W + +P+L+ A+ FY+P YS T W G++ + KFVGL+NF Sbjct: 9 MKKVLQKYW----AWAFVVIPLLLQ-AIFFYVPMFQGAFYSFTNWTGLTYNYKFVGLNNF 63 Query: 61 QQIFTGDSNFANSAWFTIKXXXXXXXXXXXXXXXXXXXXDMKLKSTSWLRAAFFIPYILS 120 + +F D F N+ FT + K+K ++ RA FF P +LS Sbjct: 64 KLLFM-DPKFMNAIGFTAIIAIAMVVGEIALGIFIARVLNSKIKGQTFFRAWFFFPAVLS 122 Query: 121 LVIVGFIWKFIFMQGFNSLGESTGWSFFGLSWLGTPGLAFISILGVSIWQSIGFYLVIYI 180 + V I+K +F G ++G + FF S LGT A + + V +WQ + ++I++ Sbjct: 123 GLTVALIFKQVFNYGLPAIGNALHIEFFQTSLLGTKWGAIFAAVFVLLWQGVAMPIIIFL 182 Query: 181 AGLQSVPDDLKEAATVDGAGAMRRFFSITLPLLAPSITISVFMALTNSIKVFDVILSLXX 240 AGLQS+P ++ EAA +DGA + + F++I LP L PS+++ +AL + FD + ++ Sbjct: 183 AGLQSIPTEITEAARIDGATSKQVFWNIELPYLLPSVSMVFILALKGGLTAFDQVFAMTG 242 Query: 241 XXXXXXXYSIAYDIYRDTFQNNLYGYGTAKALILFLAVLVVTIIQLTVFKRREV 294 S+ +Y F+NN +GY A A+ILF ++V++IIQL V K+ E+ Sbjct: 243 GGPNNATTSLGLLVYNYAFKNNQFGYANAIAVILFFLIVVISIIQLRVSKKFEI 296 >slr1202 [G] COG1175 ABC-type sugar transport systems, permease components Length = 298 Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 147/285 (51%), Gaps = 5/285 (1%) Query: 7 RRWREKLDFGLFTLPVLICIAVAFYIPFVMTIRYSMTKWN-GISKHPKFVGLDNFQQIFT 65 RRW LF LP L+ + + P + S T++ ++K P +VGL NF++++ Sbjct: 8 RRWPRGATPYLFLLPALVMLGATVFYPALQAFSLSFTQYELDLTKAPAWVGLANFERLWR 67 Query: 66 GDSNFANSAWFTIKXXXXXXXXXXXXXXXXXXXXDMKLKSTSWLRAAFFIPYILSLVIVG 125 D F + T+ + KL+ +W R A++ P I S+V+ G Sbjct: 68 -DRVFWLTFRHTLLYLVGVVPLLIMLPLGLAILVNQKLRGITWFRMAYYTPVITSIVVAG 126 Query: 126 FIWKFIFMQG--FNSLGESTGWSFFGLSWLGTPGLAFISILGVSIWQSIGFYLVIYIAGL 183 WK ++ N + G+S G+ WL +P LA S++ V++W+ +G+Y+VIY+AGL Sbjct: 127 IAWKALYASNGILNQILALLGFSD-GIPWLTSPNLALWSVMVVTVWKGLGYYMVIYLAGL 185 Query: 184 QSVPDDLKEAATVDGAGAMRRFFSITLPLLAPSITISVFMALTNSIKVFDVILSLXXXXX 243 Q++P +L EA +DGA R+ + IT+PL+ P + ++ +++KVF+ + + Sbjct: 186 QAIPQELYEAGAIDGADGWRQHWDITIPLMRPYCFLVGVLSSISALKVFEEVYIMTQGGP 245 Query: 244 XXXXYSIAYDIYRDTFQNNLYGYGTAKALILFLAVLVVTIIQLTV 288 ++ Y +Y FQ+ Y +A L+LFL + + ++I L + Sbjct: 246 LNASKTVVYYVYERAFQDLEMNYASAIGLVLFLVIFIFSVINLKL 290 >CAC3671 [G] COG1175 ABC-type sugar transport systems, permease components Length = 297 Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/293 (32%), Positives = 155/293 (52%), Gaps = 8/293 (2%) Query: 3 KTLGRRWREKLDFGLFTLPVLICIAVAFYIPFVMTIRYSMTKWNGISKHPKFVGLDNFQQ 62 + + R WR LF LP+ I + F P + I S T W+G+SK +F+GL N+ Sbjct: 12 RFVNRYWRL-----LFVLPMAILYLIFFMYPLIQGIFISFTNWDGLSKVKRFIGLKNYIG 66 Query: 63 IFTGDSNFANSAWFTIKXXXXXXXXXXXXXXXXXXXXDMKLKSTSWLRAAFFIPYILSLV 122 +F D++F+ S FT++ + K+K S+ R A+F P +LS + Sbjct: 67 LFN-DNDFSKSISFTVELTIVLIVFEIIIGLGIAILLERKIKFNSFFRTAYFFPAVLSGM 125 Query: 123 IVGFIWKFIFMQGFNSLGESTGWSFFGLSWLGTPGLAFISILGVSIWQSIGFYLVIYIAG 182 V I+ IF G +G + + F L+ L AFI+I V +WQ + +++++AG Sbjct: 126 TVSLIFSQIFQYGIPEVGNAFNINPFKLNPLSNHTGAFIAIAFVMLWQGVALPILLFLAG 185 Query: 183 LQSVPDDLKEAATVDGAGAMRRFFSITLPLLAPSITISVFMALTNSIKVFDVILSLXXXX 242 L SVP D+ EAA+VDGA M+ FF I LP L P+++I +AL + + FD I++L Sbjct: 186 LMSVPRDIIEAASVDGATPMQVFFKIKLPFLLPTLSIVFILALKSGLLAFDQIVALTYGS 245 Query: 243 XXXXXYSIAYDIYRDTFQNNLYGYGTAKALILFLAVLVVTIIQLTVFKRREVE 295 SI +Y D + +GY + +LF+ +++++++Q+ V R EVE Sbjct: 246 VDTQ--SIGLLLYNDAVSSFRFGYANSMGTLLFIIIIILSLVQIKVSSRYEVE 296 >Rv2040c [G] COG1175 ABC-type sugar transport systems, permease components Length = 300 Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 146/287 (50%), Gaps = 12/287 (4%) Query: 17 LFTLPVLICIAVAFYIPFVMTIRYSMTKWNGISKHPKFVGLDNFQQIFTGDSNF----AN 72 +F P L + V P ++ S KW+ + H FV LDNF+ +FT D F N Sbjct: 14 MFVAPNLAAVVVFMLFPLGFSLYMSFQKWD-LFTHATFVRLDNFRNLFTSDPLFLIAVVN 72 Query: 73 SAWFTIKXXXXXXXXXXXXXXXXXXXXDMKLKSTSWLRAAFFIPYILSLVIVGFIWKFIF 132 +A +T+ + K+K S R F+P +S V++ +W+F+F Sbjct: 73 TAVYTVGTVVPTVIVSLVVAAFL----NRKIKGISLFRTVVFLPLAISSVVMAVVWQFVF 128 Query: 133 MQGFNSLGESTGWSFFG-LSWLGTPGLAFISILGVSIWQSIGFYLVIYIAGLQSVPDDLK 191 L GW G + WL P A +S+ VS+W+S+ F V+ +A +Q VP+ + Sbjct: 129 NTDNGLLNIMLGWLGIGPIPWLIEPRWAMVSLCLVSVWRSVPFATVVLLAAMQGVPETVY 188 Query: 192 EAATVDGAGAMRRFFSITLPLLAPSITISVFMALTNSIKVFDVILSLXXXX--XXXXXYS 249 EAA +DGAG +R+F SIT+PL+ +++ V +++ ++ + FD++ L Y Sbjct: 189 EAARIDGAGEIRQFVSITVPLIRGALSFVVVISIIHAFQAFDLVYVLTGANGGPETATYV 248 Query: 250 IAYDIYRDTFQNNLYGYGTAKALILFLAVLVVTIIQLTVFKRREVEA 296 + +++ F +GY +A A ++F +LV+T++QL + RR EA Sbjct: 249 LGIMLFQHAFSFLEFGYASALAWVMFAILLVLTVLQLRITHRRSWEA 295 >MT2100 [G] COG1175 ABC-type sugar transport systems, permease components Length = 300 Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 146/287 (50%), Gaps = 12/287 (4%) Query: 17 LFTLPVLICIAVAFYIPFVMTIRYSMTKWNGISKHPKFVGLDNFQQIFTGDSNF----AN 72 +F P L + V P ++ S KW+ + H FV LDNF+ +FT D F N Sbjct: 14 MFVAPNLAAVVVFMLFPLGFSLYMSFQKWD-LFTHATFVRLDNFRNLFTSDPLFLIAVVN 72 Query: 73 SAWFTIKXXXXXXXXXXXXXXXXXXXXDMKLKSTSWLRAAFFIPYILSLVIVGFIWKFIF 132 +A +T+ + K+K S R F+P +S V++ +W+F+F Sbjct: 73 TAVYTVGTVVPTVIVSLVVAAFL----NRKIKGISLFRTVVFLPLAISSVVMAVVWQFVF 128 Query: 133 MQGFNSLGESTGWSFFG-LSWLGTPGLAFISILGVSIWQSIGFYLVIYIAGLQSVPDDLK 191 L GW G + WL P A +S+ VS+W+S+ F V+ +A +Q VP+ + Sbjct: 129 NTDNGLLNIMLGWLGIGPIPWLIEPRWAMVSLCLVSVWRSVPFATVVLLAAMQGVPETVY 188 Query: 192 EAATVDGAGAMRRFFSITLPLLAPSITISVFMALTNSIKVFDVILSLXXXX--XXXXXYS 249 EAA +DGAG +R+F SIT+PL+ +++ V +++ ++ + FD++ L Y Sbjct: 189 EAARIDGAGEIRQFVSITVPLIRGALSFVVVISIIHAFQAFDLVYVLTGANGGPETATYV 248 Query: 250 IAYDIYRDTFQNNLYGYGTAKALILFLAVLVVTIIQLTVFKRREVEA 296 + +++ F +GY +A A ++F +LV+T++QL + RR EA Sbjct: 249 LGIMLFQHAFSFLEFGYASALAWVMFAILLVLTVLQLRITHRRSWEA 295 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.143 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,996,762 Number of extensions: 709801 Number of successful extensions: 2940 Number of sequences better than 1.0e-05: 153 Number of HSP's gapped: 2758 Number of HSP's successfully gapped: 153 Length of query: 296 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 190 Effective length of database: 26,153,027 Effective search space: 4969075130 Effective search space used: 4969075130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)