BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0341.0023.p (278 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cgl2406 [G] COG0395 ABC-type sugar transport system, permease co... 145 8e-35 MYPU_1000 [G] COG0395 ABC-type sugar transport system, permease ... 144 2e-34 SP1895 [G] COG0395 ABC-type sugar transport system, permease com... 142 5e-34 BH1119 [G] COG0395 ABC-type sugar transport system, permease com... 123 3e-28 BS_amyC [G] COG0395 ABC-type sugar transport system, permease co... 122 5e-28 >Cgl2406 [G] COG0395 ABC-type sugar transport system, permease component Length = 304 Score = 145 bits (365), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 143/238 (60%), Gaps = 5/238 (2%) Query: 34 NSLKSFSEVMTDVIALP---QHLALSNYSYVWKFINYPRLFLNNFIITGLGLLGIVFISS 90 NS KS + +D +LP + N+ + L +FIIT L ++ IVF S+ Sbjct: 57 NSFKSKFAISSDPFSLPIGETWVGFENFMVGLTKQGFLEATLWSFIITILSVIVIVFFSA 116 Query: 91 IAAYKLARTKSRLSGIIYFLCIMPMLIPFQSIMLTVLQTAKNLNLSESTWGLGLLYWGFG 150 + AY + R K+ + ++Y+L ++ M+IPFQ +M ++ A L+L+ G+ +LY GFG Sbjct: 117 MTAYYITRVKTWWTNLLYYLFVVSMIIPFQMVMFPTVKIADMLHLNNPI-GIVVLYLGFG 175 Query: 151 APLAVFIYHGFVKGIPTEIDESATIDGASSFRLFFSVIFPLLKSVTTTIVIIDVMWIWND 210 + L+VF++ GFVK IP +++E+A IDG + +F V++P+LK T+ I++ MW+WND Sbjct: 176 SGLSVFMFAGFVKSIPLDVEEAAMIDGCGPLQNYFRVVWPMLKPTAITVAILNAMWVWND 235 Query: 211 FLLPLLMVNGSPDTKTLTLAAYTFVGQYTSDWQYAMTAM-VMAVLPSIIVFIFLQKYI 267 +LLP L++ S KT+ + +FVG + AM AM V+A++P +I + Q++I Sbjct: 236 YLLPYLVIGLSTRYKTIPVVIQSFVGSNGNRDTGAMMAMLVLAIIPIVIFYFSTQRHI 293 >MYPU_1000 [G] COG0395 ABC-type sugar transport system, permease component Length = 288 Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 145/239 (60%), Gaps = 10/239 (4%) Query: 35 SLKSFSEVMT-DVIALPQHLALSNYSYVWKFINYPRLFLNNFIITGLGLLGIVFISSIAA 93 S K+ +E++T ++ ALP NY ++ +N+ F + ++T + + I+F SSI A Sbjct: 44 SFKNITELITKNIFALPSKYEGPNYQRAFQALNFAESFSVSLLVTIVSNISIIFFSSITA 103 Query: 94 YKLARTKSRLSGIIYFLCIMPMLIPFQSIMLTV---LQTAKNLNLSESTWGLGLLYWGFG 150 ++LAR+K +S II+++ ++ +++PFQ+IML + + K LNL +GL +Y GFG Sbjct: 104 WQLARSKRLISKIIFYMFLITIIVPFQAIMLPLIYLMGKMKFLNL----FGLIFMYTGFG 159 Query: 151 APLAVFIYHGFVKGIPTEIDESATIDGASSFRLFFSVIFPLLKSVTTTIVIIDVMWIWND 210 P+++F+ HGF+ IP ++E + ++G R++F +I PLLK + T+ II+ +WIWND Sbjct: 160 MPISIFMMHGFLSNIPLSLEEVSKVEGYRPIRVYFKIILPLLKPIIATVAIINTIWIWND 219 Query: 211 FLLPLL--MVNGSPDTKTLTLAAYTFVGQYTSDWQYAMTAMVMAVLPSIIVFIFLQKYI 267 FLLP L + N T T+ VG Y +D+ M + + ++P +I FI +QK I Sbjct: 220 FLLPYLVYLSNSHSPTTTIIRLQEGLVGTYGTDFTAIMAGLTILIIPIVIFFIVMQKNI 278 >SP1895 [G] COG0395 ABC-type sugar transport system, permease component Length = 278 Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 137/246 (55%), Gaps = 23/246 (9%) Query: 34 NSLKSFSEVMTDVIALPQHLALSNYS---------YVWKFINYPRLFLNNFIITGLGLLG 84 +S K +++ + P + N+S Y W N+ +IT L LL Sbjct: 34 SSFKPTKDIVDNFFGFPTNFTWDNFSRLLADGIGGYYW----------NSVVITVLSLLA 83 Query: 85 IVFISSIAAYKLARTKSRLSG--IIYFLCIMPMLIPFQSIMLTVLQTAKNLNLSESTWGL 142 ++ +AAY +AR S+ I+Y L I+ + +PFQ IM+ + L L+ +T+GL Sbjct: 84 VMIFIPMAAYSIARNMSKRKAFTIMYTLLILGIFVPFQVIMIPITVMMSKLGLA-NTFGL 142 Query: 143 GLLYWGFGAPLAVFIYHGFVK-GIPTEIDESATIDGASSFRLFFSVIFPLLKSVTTTIVI 201 LLY + P +F+Y G++K IP +DE+A IDGA+ F +F +IFP++K + T +I Sbjct: 143 ILLYLTYAIPQTLFLYVGYIKISIPESLDEAAEIDGANQFTTYFRIIFPMMKPMHATTMI 202 Query: 202 IDVMWIWNDFLLPLLMVNGSPDTKTLTLAAYTFVGQYTSDWQYAMTAMVMAVLPSIIVFI 261 I+ +W WNDF+LPLL++N TL L Y + GQY +D+ + + V+ ++ IV++ Sbjct: 203 INALWFWNDFMLPLLVLNRDSKMWTLPLFQYNYAGQYFNDYGPSFASYVVGIISITIVYL 262 Query: 262 FLQKYI 267 F Q++I Sbjct: 263 FFQRHI 268 >BH1119 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 127/239 (53%), Gaps = 6/239 (2%) Query: 34 NSLKSFSEVMTDVIAL-PQHLALSNYSYVWKFIN---YPRLFLNNFIITGLGLLGIVFIS 89 +SLK SE+ + +L P SNY W + F N+FIIT ++G + S Sbjct: 34 SSLKPASEIFSQASSLIPSEFVWSNYPDGWAGFGRTGFDIYFKNSFIITTSVVIGAILSS 93 Query: 90 SIAAYKLARTKSRLSGIIYFLCIMPMLIPFQSIMLTVLQTAKNLNLSESTWGLGLLYWGF 149 SI AY AR + + +++ I +++P Q ++ NL + + L + + Sbjct: 94 SIVAYGFARLQFKFKKVLFACLIATVMLPVQITLIPQYILFHNLGWVNTFYPLIVPAFLG 153 Query: 150 GAPLAVFIYHGFVKGIPTEIDESATIDGASSFRLFFSVIFPLLKSVTTTIVIIDVMWIWN 209 G P +F+ F++GIP E+DE+A IDG S+F +F+ VI PLLK T+ I MW W+ Sbjct: 154 GTPFFIFLLIQFIRGIPRELDEAAIIDGCSTFGVFWRVILPLLKPALVTVAIFAFMWTWD 213 Query: 210 DFLLPLLMVNGSPDTKTLTLAAYTFV-GQYTSDWQYAMTAMVMAVLPSIIVFIFLQKYI 267 DFL PL+ +N + D +T+ L F+ + + W + +++LP I+F+F Q+Y+ Sbjct: 214 DFLAPLIYLNKT-DIQTVALGLRNFMDAESGTSWGALLAMSTLSLLPQFIIFLFFQRYL 271 >BS_amyC [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 124/218 (56%), Gaps = 2/218 (0%) Query: 50 PQHLALSNYSYVWKFINYPRLFLNNFIITGLGLLGIVFISSIAAYKLARTKSRLSGIIYF 109 P ++ N+S W+ + F+N IITG L ++ S+AAY LAR +++L+ ++ Sbjct: 48 PADISFHNFSEAWERASLGNSFINTMIITGFSALLLIIFGSLAAYPLARRETKLNKAVFA 107 Query: 110 LCIMPMLIPFQSIMLTVLQTAKNLNLSESTWGLGLLYWGFGAPLAVFIYHGFVKG-IPTE 168 L I M+IP + M+ + + + + + + PL VF+Y GF++ IP E Sbjct: 108 LLISIMIIPPLTSMVPLYRMVVDAGMVNTHAIAIFINTAAYMPLTVFLYSGFIRSTIPKE 167 Query: 169 IDESATIDGASSFRLFFSVIFPLLKSVTTTIVIIDVMWIWNDFLLPLLMVNGSPDTKTLT 228 + E+A IDGA ++FF+++FPLLK +T TI II ++IWND+ + + +TLT Sbjct: 168 LVEAARIDGAGMLKIFFTIVFPLLKPITATICIISCVFIWNDYQFAIFFLQDQ-KVQTLT 226 Query: 229 LAAYTFVGQYTSDWQYAMTAMVMAVLPSIIVFIFLQKY 266 +A F G+ ++ A +MA+LP +++F+ LQKY Sbjct: 227 VAMAGFFGENANNLHLVAAAALMAMLPMVVLFLALQKY 264 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.140 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,367,191 Number of extensions: 601093 Number of successful extensions: 2244 Number of sequences better than 1.0e-05: 184 Number of HSP's gapped: 2099 Number of HSP's successfully gapped: 184 Length of query: 278 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 173 Effective length of database: 26,268,361 Effective search space: 4544426453 Effective search space used: 4544426453 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)