BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0341.0019.p (296 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2116 [G] COG0395 ABC-type sugar transport system, permease co... 219 3e-57 BH0795 [G] COG0395 ABC-type sugar transport system, permease com... 219 5e-57 SP0091 [G] COG0395 ABC-type sugar transport system, permease com... 204 2e-52 SPy1593 [G] COG0395 ABC-type sugar transport system, permease co... 191 9e-49 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 177 2e-44 >lin2116 [G] COG0395 ABC-type sugar transport system, permease component Length = 323 Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 113/278 (40%), Positives = 164/278 (58%), Gaps = 2/278 (0%) Query: 20 LIVLAVFCIVPFXXXXXXXXXXXXXXXXKGFQLIPSTFSTEAYGLLFKYPAEMLRAYXXX 79 L LA+ CI PF GFQLIP +S EAY L+K ++L++Y Sbjct: 45 LAFLALICIFPFLYIIVISFSSETSLAANGFQLIPKEWSMEAYEYLWKMKGQLLQSYGIT 104 Query: 80 XXXXXXXXXXXXFLTSMTAYVLSRRDFKWRSRXXXXXXXXXXXXXXXVPSYLLIINFLHL 139 + ++ +Y +SR FK+R + VP+Y+++ FLHL Sbjct: 105 IVVTVIGTVCSVAMIALYSYAISRPQFKYRRQFTFIAFFTMLFSGGMVPAYIVMTQFLHL 164 Query: 140 KDTLLVLILPMLMNVFYIIVMKSF-MSSIPDAITESAKIDGAGDFRIFLQLIVPLSKPAL 198 ++++ +ILP+ MN FYI++M++F + SIP+ I E+A+I+GAG+ RIFLQ++VPLS P L Sbjct: 165 RNSIWAMILPLAMNAFYIMIMRTFFLRSIPEPILEAARIEGAGELRIFLQMVVPLSLPGL 224 Query: 199 ATIGLFIALAYWNDWYNALLYISKSELMPLQYYLYKMLGNMDGMRK-AMMASGAVVNTDL 257 ATI LF L YWNDW+ A LYI L+PLQ L K+ N++ MR+ + +A A + Sbjct: 225 ATIALFSTLGYWNDWFQASLYIDNPNLVPLQSLLMKIENNLEFMRQNSEIAYTAGAFKSI 284 Query: 258 PTESLKMAMTIVATGPILLAYPFIQKYFVQGLTIGAVK 295 P + KMAM +++T PI + YPF QKYF+ GLTIG VK Sbjct: 285 PQDGAKMAMVVISTLPIAITYPFFQKYFISGLTIGGVK 322 >BH0795 [G] COG0395 ABC-type sugar transport system, permease component Length = 322 Score = 219 bits (557), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 118/281 (41%), Positives = 172/281 (61%), Gaps = 4/281 (1%) Query: 19 TLI-VLAVFCIVPFXXXXXXXXXXXXXXXXKGFQLIPSTFSTEAYGLLFKYPAEMLRAYX 77 TLI A CI PF G+++IPS +S +AY L++ +E+ RAY Sbjct: 41 TLIGTFAFLCIFPFIYVIIISLTSEQSLAMNGYRIIPSEWSFDAYRYLWQMRSEVFRAYG 100 Query: 78 XXXXXXXXXXXXXXFLTSMTAYVLSRRDFKWRSRXXXXXXXXXXXXXXXVPSYLLIINFL 137 + ++ AY +SR+ F +R VP Y+++ FL Sbjct: 101 VTIFITVVGTLMSVSIIALYAYAISRKQFLYRKLFTFIAFFTMLFSGGMVPFYIVMTQFL 160 Query: 138 HLKDTLLVLILPMLMNVFYIIVMKSFMS-SIPDAITESAKIDGAGDFRIFLQLIVPLSKP 196 LK+++ LILPM +N FYII+M++F S+P+AI ESA+IDGAG+FRIF ++++PLS P Sbjct: 161 GLKNSVWALILPMAVNAFYIIIMRTFFQRSVPEAILESARIDGAGEFRIFFKIVLPLSIP 220 Query: 197 ALATIGLFIALAYWNDWYNALLYISKSELMPLQYYLYKMLGNMDGMRK-AMMAS-GAVVN 254 +ATI LF LAYWNDW+NALL+I +L+PLQ L ++ N+D +R+ AM++S + + Sbjct: 221 GIATIALFSTLAYWNDWFNALLFIDDPKLVPLQSLLMRIENNLDFIRQNAMLSSQNSALL 280 Query: 255 TDLPTESLKMAMTIVATGPILLAYPFIQKYFVQGLTIGAVK 295 +P +S +MAM ++AT PI L+YPF QKYFV+GLTIG VK Sbjct: 281 DSIPQDSARMAMVVIATLPIALSYPFFQKYFVKGLTIGGVK 321 >SP0091 [G] COG0395 ABC-type sugar transport system, permease component Length = 307 Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 111/275 (40%), Positives = 156/275 (56%), Gaps = 2/275 (0%) Query: 22 VLAVFCIVPFXXXXXXXXXXXXXXXXKGFQLIPSTFSTEAYGLLFKYPAEMLRAYXXXXX 81 ++A+ CI+PF G+ PS F + + L ++ ++L+A Sbjct: 33 LIALSCILPFVFVIIISVTDEKSLLQYGYSFFPSQFGLDGFEFLAQFKDKILQALFISVF 92 Query: 82 XXXXXXXXXXFLTSMTAYVLSRRDFKWRSRXXXXXXXXXXXXXXXVPSYLLIINFLHLKD 141 F+T+ AY +SR FK+R VP Y+++ L L D Sbjct: 93 VTVVGTLTNVFITTTYAYAISRTTFKYRRFFTIFVLLSMLFNAGLVPGYIMVTRVLQLGD 152 Query: 142 TLLVLILPMLMNVFYIIVMKSFMS-SIPDAITESAKIDGAGDFRIFLQLIVPLSKPALAT 200 T+ LI+PML++ F II+M+SF +IP+AI ESA+IDGA + RIF Q+ +PLS P +AT Sbjct: 153 TVWALIVPMLLSPFNIILMRSFFKKTIPEAILESARIDGASEARIFFQICLPLSLPGIAT 212 Query: 201 IGLFIALAYWNDWYNALLYISKSELMPLQYYLYKMLGNMDGMRKAMMASGAVVNTDLPTE 260 I L AL +WNDW+NALLYI L PLQY L ++ NMD + KA+ G + LP E Sbjct: 213 ITLLTALGFWNDWFNALLYIKSDNLYPLQYLLMQIQQNMDYIAKAVGLIGQ-LGVALPKE 271 Query: 261 SLKMAMTIVATGPILLAYPFIQKYFVQGLTIGAVK 295 + +MAM +VAT PI + YPF Q+YFV+GLTIG VK Sbjct: 272 TGRMAMVVVATLPIAILYPFFQRYFVKGLTIGGVK 306 >SPy1593 [G] COG0395 ABC-type sugar transport system, permease component Length = 308 Score = 191 bits (486), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 101/253 (39%), Positives = 150/253 (59%), Gaps = 5/253 (1%) Query: 48 KGFQLIPSTFSTEAYGLLFK--YPAEMLRAYXXXXXXXXXXXXXXXFLTSMTAYVLSRRD 105 G+ P +ST+AY +F+ ++R++ +TS AY +SR Sbjct: 55 HGYSFFPDVWSTKAYQYIFQGAMSHRIMRSFGISVFITVVGTFINTTMTSTYAYAISRPY 114 Query: 106 FKWRSRXXXXXXXXXXXXXXXVPSYLLIINFLHLKDTLLVLILPMLMNVFYIIVMKSFMS 165 F +R V +YL++ N LHLKDT+ LILPM + F I+VM++F Sbjct: 115 FPYRRFFTVYALITMLFAPGMVANYLVVSNLLHLKDTVWALILPMALGPFGILVMRTFFK 174 Query: 166 -SIPDAITESAKIDGAGDFRIFLQLIVPLSKPALATIGLFIALAYWNDWYNALLYISKSE 224 ++PD+I ESA++DGA ++ IF+++++PL+ P +ATI LF AL YWNDW+NALLY+ Sbjct: 175 KTVPDSIIESARMDGASEWMIFMKIVLPLAVPGIATISLFSALTYWNDWFNALLYVQSEN 234 Query: 225 LMPLQYYLYKMLGNMDGMRKAMMASGAVVNT--DLPTESLKMAMTIVATGPILLAYPFIQ 282 L P+QY L K+ N+ + + S + ++ LP ES++MA+ ++AT PI L YPF Q Sbjct: 235 LYPMQYLLMKIQSNLQALAQNAGMSAQMADSLASLPKESVRMAIVVIATLPIALTYPFFQ 294 Query: 283 KYFVQGLTIGAVK 295 KYFV GLTIG VK Sbjct: 295 KYFVGGLTIGGVK 307 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 101/280 (36%), Positives = 155/280 (55%), Gaps = 4/280 (1%) Query: 17 YATLIVLAVFCIVPFXXXXXXXXXXXXXXXXKGFQLIPSTFSTEAYGLLFKYPAEMLRAY 76 Y L++ A+ C++PF K F LIP+TFS +AY +F + ++ Sbjct: 11 YGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFSTDI-IYKSL 69 Query: 77 XXXXXXXXXXXXXXXFLTSMTAYVLSRRDFKWRSRXXXXXXXXXXXXXXXVPSYLLIINF 136 FL+S+ AY LSRRD R +P++L ++ Sbjct: 70 LVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIPTFL-VVKS 128 Query: 137 LHLKDTLLVLILPMLMNVFYIIVMKSFMSSIPDAITESAKIDGAGDFRIFLQLIVPLSKP 196 L L D+ LILP +N F +I++K+F +IP ++ ESAKIDG D IF ++++PLS P Sbjct: 129 LGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFKIVLPLSLP 188 Query: 197 ALATIGLFIALAYWNDWYNALLYISKSELMPLQYYLYKMLGNMDGMRKAMMASGAVVNTD 256 A+ATI LF A+ YWN + A+LY++ S P+Q L +++ GM+ M G+ + Sbjct: 189 AIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIVIVSSGMQGDMSEMGS--GSP 246 Query: 257 LPTESLKMAMTIVATGPILLAYPFIQKYFVQGLTIGAVKG 296 P +++KMA+ +VAT P+LL YPFIQK+F +G +G+VKG Sbjct: 247 PPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVKG 286 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.142 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,892,167 Number of extensions: 515919 Number of successful extensions: 1795 Number of sequences better than 1.0e-05: 130 Number of HSP's gapped: 1666 Number of HSP's successfully gapped: 130 Length of query: 296 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 190 Effective length of database: 26,153,027 Effective search space: 4969075130 Effective search space used: 4969075130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)