BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0341.0018.p (314 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP0090 [G] COG4209 ABC-type polysaccharide transport system, per... 263 3e-70 BH0794 [G] COG4209 ABC-type polysaccharide transport system, per... 249 4e-66 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 172 6e-43 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 170 2e-42 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 167 2e-41 >SP0090 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 263 bits (671), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 134/319 (42%), Positives = 197/319 (61%), Gaps = 5/319 (1%) Query: 1 MERGFEMKQKQHGFWDDVKKYRTLLLMLTPAVLFFLVFAYVPMAGIVLAFKQYNYT---- 56 M+ + ++ F ++ LLM+ P L+ ++F Y+P+ G V+AFK Y+ T Sbjct: 1 MDIKIKREEIMKKFSKTLRDNWIFLLMVLPGALWLILFFYIPVFGNVVAFKDYHMTSNGF 60 Query: 57 -DGILHSPWNGLDNFRFFFGSGDAWRVTRNTALYNIAFIVVNNVLQIFAGILLFEVAGKW 115 D I++S W GLDNFRF F S DA+ +TRNT LYN+ FI + V+ + I+L E+ K Sbjct: 61 IDSIINSKWVGLDNFRFLFSSRDAFIITRNTVLYNLGFIFLGLVVSVGIAIILSELRSKR 120 Query: 116 FRKITQTILFLPYFISWVVVGAIAYNLFNFDVGTVNVLLKGLGMQPIDIYNTAAYWPVIL 175 KI QT + PYF+SWV++ N D G N LL+ LG++ ++ Y WP +L Sbjct: 121 MVKIFQTSMLFPYFLSWVIISFFTDAFLNIDKGVFNHLLESLGLKEVNFYADLGIWPYLL 180 Query: 176 VVVSAWKALGYGTIMYLAAITSIDTEMYEAAEIDGANIFQRIMKITVPNLIPTVIILVLL 235 + + WK GY ++MY A I ID YEAA +DGA+ +QRI +T+P L P V +L +L Sbjct: 181 LFLGIWKGFGYSSVMYYATIMGIDPTYYEAATVDGASKWQRIRNVTIPQLTPLVTVLTIL 240 Query: 236 AIGNIFRGDFGMFYNMVGNNGLLFSSTDVIDTFVFRSLTTSNEIGMSAAAGFYQSLLGFA 295 A+GNIFR DFG+FY + N G L++ T+V+D +VF LT + +IGM+AAAG YQS++G Sbjct: 241 AVGNIFRADFGLFYQIPHNAGQLYNVTNVLDVYVFNGLTQTADIGMAAAAGLYQSVVGLI 300 Query: 296 TIMLANYAVRKYDKDRALF 314 ++L+N R+ D + ALF Sbjct: 301 LVILSNLLARRVDPNSALF 319 >BH0794 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 312 Score = 249 bits (636), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 135/314 (42%), Positives = 204/314 (64%), Gaps = 9/314 (2%) Query: 6 EMKQKQHGFWDDVKKYRTLLLMLTPAVLFFLVFAYVPMAGIVLAFKQYN-YTDG----IL 60 +++Q +D+ R LLM+ P +++ LV Y+PM G ++AFK + + DG + Sbjct: 3 KIQQTLKNIYDN----RIWLLMVLPGLIWLLVLKYIPMFGQIIAFKDFRFHPDGFFASLY 58 Query: 61 HSPWNGLDNFRFFFGSGDAWRVTRNTALYNIAFIVVNNVLQIFAGILLFEVAGKWFRKIT 120 HS W GL+NF+F F + DA+ +TRNT LYN+ FIV+ VL + I++ E+ + KI Sbjct: 59 HSEWVGLENFQFLFSTNDAFIITRNTVLYNVVFIVLGLVLAVAVAIIISELTNQKLAKIY 118 Query: 121 QTILFLPYFISWVVVGAIAYNLFNFDVGTVNVLLKGLGMQPIDIYNTAAYWPVILVVVSA 180 QT + P+F+SWVVV + + D G N +L + + P+ YN YWP ++ +S Sbjct: 119 QTGMLFPHFLSWVVVSYFVFTFLSIDRGLFNTILSAINIDPVAWYNEPGYWPYFIITISQ 178 Query: 181 WKALGYGTIMYLAAITSIDTEMYEAAEIDGANIFQRIMKITVPNLIPTVIILVLLAIGNI 240 WK +G+ +I+YLAAI +ID YEAA IDGA+ +Q+I +T+P ++P +IIL +L IG+I Sbjct: 179 WKGVGFSSIVYLAAIVAIDRTYYEAAIIDGASKWQQIRHVTIPMIMPLIIILTILNIGSI 238 Query: 241 FRGDFGMFYNMVGNNGLLFSSTDVIDTFVFRSLTTSNEIGMSAAAGFYQSLLGFATIMLA 300 F DFG+FY + ++G L+S T+VIDT+V+R L T +IGMS AAG YQ+ +GF I++ Sbjct: 239 FSADFGLFYQVPRDSGPLYSVTNVIDTYVYRGLMTMGDIGMSTAAGLYQATVGFVLILIT 298 Query: 301 NYAVRKYDKDRALF 314 NY VRK D++ ALF Sbjct: 299 NYIVRKIDEENALF 312 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 172 bits (436), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 99/309 (32%), Positives = 174/309 (56%), Gaps = 4/309 (1%) Query: 3 RGFEMKQKQHGFWDDVKKYRTLLLMLTPAVLFFLVFAYVPMAGIVLAFKQYNYTDGILHS 62 + E K K+ + + ++ L ++L PA++ L+F Y PM GIV+AF+ Y G S Sbjct: 11 KTVERKLKKQKW--NFRRTWQLHVLLIPALVLALIFQYGPMFGIVMAFQDYKPWLGFTGS 68 Query: 63 PWNGLDNFRFFFGSGDAWRVTRNTALYNIAFIVVNNVLQIFAGILLFEVAGKWFRKITQT 122 W GL +F F A +V NT + ++ ++ ++ I +LL E+ ++ QT Sbjct: 69 EWVGLQHFITMFEYDYAKQVIWNTLVISVLKMIFGLIVPIIVALLLNEMYQMVVKRTVQT 128 Query: 123 ILFLPYFISWVVVGAIAYNLFNFDVGTVNVLLKGLGMQPIDIYNTAAYWPVILVVVSAWK 182 I++LPYF+SWV++G I ++ + D G VN L G+ PI + ++ +V+ WK Sbjct: 129 IIYLPYFLSWVILGGILIDVLSPDGGIVNQALGLFGIDPIFFLGSNDWFRTTVVISDLWK 188 Query: 183 ALGYGTIMYLAAITSIDTEMYEAAEIDGANIFQRIMKITVPNLIPTVIILVLLAIGNIFR 242 G+ TI++LAAIT+++ +YEAA +DGAN +++ + IT+P ++P +I++ L++GNI Sbjct: 189 ETGFNTIVFLAAITAVNPNLYEAAVVDGANRWKQTLHITLPAMLPIIIVVATLSLGNILN 248 Query: 243 GDFGMFYNMVGNNGLLFSSTDVIDTFVFRSLTTSNEIGMSAAAGFYQSLLGFATIMLANY 302 F +N+ N L++ + D+IDT+V+R + + A G ++SL+ I++ Sbjct: 249 AGFDQIFNLY--NPLVYQTGDIIDTYVYRVSLVNGDFSYGTAVGLFKSLISLVLIIIGYR 306 Query: 303 AVRKYDKDR 311 KY R Sbjct: 307 LAYKYANWR 315 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 97/277 (35%), Positives = 160/277 (57%), Gaps = 2/277 (0%) Query: 34 FFLVFAYVPMAGIVLAFKQYNYTDGILHSPWNGLDNFRFFFGSGDAWRVTRNTALYNIAF 93 +FL+F Y+PM G+++AFK Y+ G S W G D F+ FF + D +R+ RNT + Sbjct: 41 YFLIFKYLPMWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLD 100 Query: 94 IVVNNVLQIFAGILLFEVAGKWFRKITQTILFLPYFISWVVVGAIAYNLFNFDVGTVNVL 153 ++ + +LL EV +++ QT +++P+F+SW +V +I + F D G +N L Sbjct: 101 LLFAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKL 160 Query: 154 LKGLGMQPIDIYNTAAYWPVILVVVSAWKALGYGTIMYLAAITSIDTEMYEAAEIDGANI 213 + L + I + A ++ ++V+ S WK G+GTI++LAA+ ++D E YEAA +DGA Sbjct: 161 IMSLTGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGAGR 220 Query: 214 FQRIMKITVPNLIPTVIILVLLAIGNIFRGDFGMFYNMVGNNGLLFSSTDVIDTFVFRSL 273 F+R+ IT+P + T+I+L++L IG+ F Y M N L S D+ DT+V+ Sbjct: 221 FRRMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLM--TNSLNRSVADIFDTYVYMMG 278 Query: 274 TTSNEIGMSAAAGFYQSLLGFATIMLANYAVRKYDKD 310 T S A G ++S++G I ANY +K+D++ Sbjct: 279 ITQGAYSYSTAVGLFKSVVGIILIFGANYIAKKFDQE 315 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 99/300 (33%), Positives = 162/300 (54%), Gaps = 4/300 (1%) Query: 14 FWDDVKKYRTLLLMLTPAVLFFLVFAYVPMAGIVLAFKQYNYTDGILHSPWNGLDNFRFF 73 F+ + + LLLM P +++ ++F YVP+ G +AF+ + I W G +F F Sbjct: 38 FFKKCYEQKALLLMSLPFLIWLIIFRYVPLYGWSIAFQDFRPARPIFDQDWAGFKHFTFL 97 Query: 74 FGSGDAWRVTRNTALYNIAFIVVNNVLQIFAGILLFEVAGKWFRKITQTILFLPYFISWV 133 F + V RNT ++ +V+ V I ILL E+ F+++ QTI ++P+F+SWV Sbjct: 98 FTDPRFFEVLRNTLAMSLINLVLGFVTAIGLAILLNELRNLTFKRVVQTISYMPHFLSWV 157 Query: 134 VVGAIAYNLFNFDVGTVNVLLKGLGM--QPIDIYNTAAYWPVILVVVSAWKALGYGTIMY 191 V + + + G +N++L LGM +PI Y+ I+ WK +G+ TI+Y Sbjct: 158 VAAGLVSAALSIENGIINIVLMKLGMISEPIMWLGVGEYFWGIIGASDVWKNVGWNTIIY 217 Query: 192 LAAITSIDTEMYEAAEIDGANIFQRIMKITVPNLIPTVIILVLLAIGNIFRGDFGMFYNM 251 LAAIT IDTE YEAAEIDGA QRI IT+P + P ++IL+++ +G I F Y + Sbjct: 218 LAAITMIDTEQYEAAEIDGATRLQRIWYITLPGMRPVIVILLIMNLGYILESGFEAQYLL 277 Query: 252 VGNNGLLFSSTDVIDTFVFRSLTTSNEIGMSAAAGFYQSLLGFATIMLANYAVRKYDKDR 311 + + F+ +D FV R ++ AAG +++++ F + AN+ ++ + R Sbjct: 278 MNPMNMDFAEN--LDIFVLRYGINMGNFSLATAAGIFKTVVSFIFLFSANHIAKRLGEAR 335 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.144 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,503,849 Number of extensions: 1008390 Number of successful extensions: 3396 Number of sequences better than 1.0e-05: 161 Number of HSP's gapped: 3300 Number of HSP's successfully gapped: 161 Length of query: 314 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 208 Effective length of database: 26,153,027 Effective search space: 5439829616 Effective search space used: 5439829616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 116 (49.3 bits)