BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0050.p (342 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAP0135 [R] COG0673 Predicted dehydrogenases and related proteins 254 1e-67 AGc4571 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 113 5e-25 AGc4574 [E] COG0747 ABC-type dipeptide transport system, peripla... 113 5e-25 AGc4575 [E] COG2355 Zn-dependent dipeptidase, microsomal dipepti... 113 5e-25 AGc457 [R] COG0673 Predicted dehydrogenases and related proteins 113 5e-25 >CAP0135 [R] COG0673 Predicted dehydrogenases and related proteins Length = 334 Score = 254 bits (649), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 130/326 (39%), Positives = 186/326 (57%), Gaps = 6/326 (1%) Query: 11 RLGILGASNIAVPALLEPARYVETVSIAAIANRTFEKAAKLAETYQIPYVAXXXXXXXXX 70 +GI+G S I A++ PA+ ++ + I IA+R KA + A+ Y+I V Sbjct: 8 NMGIIGCSTILPRAIIGPAKAIDNLCIYGIASRKRSKADEYAKKYKIDRVFDSYEDLLNC 67 Query: 71 XXXDGVYIALSNELHTEWAVRALNAGKHVLAEKPIALNAEEAERLGMAKEKPGSPKLAEG 130 VYIAL N+LH EW ++A+NA KHVL EKP+ L ++E + + EK + K+ EG Sbjct: 68 EDIHCVYIALPNDLHIEWVLKAINANKHVLVEKPMCLKSDEFDLILKEYEKK-NIKILEG 126 Query: 131 LMIAFHPWQQALKSIVDSGQFGQLHRIRTRITVPAKDRHAGNYRSVKAKGGGAFADLGCY 190 L I HPWQ A+K +V S ++G+L ++T I + K+ + NYR +GGGAF DLGCY Sbjct: 127 LAIQHHPWQLAIKDMVSSAEYGKLQEVKTDICIILKNSNENNYRRFPERGGGAFYDLGCY 186 Query: 191 WLQFLQAIVSLQPREIAAQSSFDGPEGCDWTFQAVLKYADGLEAECLTSFEQPFRASHTL 250 WLQFLQ I +P S FDGP CDWTF A +Y GL++ + SFE P++ H L Sbjct: 187 WLQFLQFITGAKPESYKGSSKFDGPNNCDWTFNANAEYKSGLKSSFIASFELPYKVEHIL 246 Query: 251 YFDHTVLTIPDFFRPVKGFYKIKIRHDLPDNHST-LCEFEPMNYYVSQLEAFAEIMSGQR 309 F+ + + DFFR G YKIK ++ ++ S F+P NYYV+QL F E ++G + Sbjct: 247 KFEKATVKVHDFFRACLGNYKIKFSIEVKEDGSIKKYSFDPQNYYVNQLRFFMEAINGSK 306 Query: 310 AE----KLEAVWERVQMHSLIMAEAR 331 + L +ERV + I AR Sbjct: 307 EDIYNMYLRQSYERVNIMEEIYEHAR 332 >AGc4571 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 671 Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 20/209 (9%), Positives = 42/209 (20%), Gaps = 3/209 (1%) Query: 11 RLGILGASNIAVPALLEPARYVETVSIAAIANRTFEKAAKLAETYQIPYVAXXXXXXXXX 70 I A + L I + AA LA QI + Sbjct: 27 APEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAPLAAFSQIRHEVPMLSLDNVF 86 Query: 71 XXXDGVYIALSNELHTEWAVRALNAGKHVLAEKPIALNAEEAERLGMAKEKPGSPKLAEG 130 + + + + + L +++ E + A G+ + Sbjct: 87 DEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGT-TGEDI 145 Query: 131 LMIAFHPWQQALKSIVDSGQFGQLHRIRTRITVPAKDRHAGNYRSVKAKGGGAFADLGCY 190 LK ++ R + N + + G Sbjct: 146 TSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQ--AGFEKINEDARRTGGKVFANPRNAA 203 Query: 191 WLQFLQAIVSLQPREIAAQSSFDGPEGCD 219 Q + + + Sbjct: 204 AGSLRQLDPRITAKRPLTFFCYGVGVLEG 232 >AGc4574 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 351 Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 3/209 (1%) Query: 11 RLGILGASNIAVPALLEPARYVETVSIAAIANRTFEKAAKLAETYQIPYVAXXXXXXXXX 70 R GI+ + IA ++ + E ++AIA+R +A +AE + +P+ Sbjct: 27 RFGIISTAKIAQDHVIPAIQDAENCVVSAIASRDHARARAVAERFSVPHAFGSYEEMLAS 86 Query: 71 XXXDGVYIALSNELHTEWAVRALNAGKHVLAEKPIALNAEEAERLGMAKEKPGSPKLAEG 130 D VYI L H EW ++A NAGKHVL EKPIAL AEE + L A+++ G ++E Sbjct: 87 DVIDAVYIPLPTAQHVEWTIKAANAGKHVLCEKPIALKAEEIDTLIAARDRNGV-IVSEA 145 Query: 131 LMIAFHPWQQALKSIVDSGQFGQLHRIRTRITVPAKDRHAGNYRSVKAKGGGAFADLGCY 190 M+ + P +K ++ SG G L ++ + +R GN R++ GGGA D+G Y Sbjct: 146 FMVTYSPVWAKVKELLASGAIGTLKHVQGAFSY--FNRDPGNMRNIPELGGGALPDIGVY 203 Query: 191 WLQFLQAIVSLQPREIAAQSSFDGPEGCD 219 + +PR + A D G D Sbjct: 204 PTIVTRFATGAEPRRVQATVERDREFGTD 232 >AGc4575 [E] COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog Length = 351 Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 3/209 (1%) Query: 11 RLGILGASNIAVPALLEPARYVETVSIAAIANRTFEKAAKLAETYQIPYVAXXXXXXXXX 70 R GI+ + IA ++ + E ++AIA+R +A +AE + +P+ Sbjct: 27 RFGIISTAKIAQDHVIPAIQDAENCVVSAIASRDHARARAVAERFSVPHAFGSYEEMLAS 86 Query: 71 XXXDGVYIALSNELHTEWAVRALNAGKHVLAEKPIALNAEEAERLGMAKEKPGSPKLAEG 130 D VYI L H EW ++A NAGKHVL EKPIAL AEE + L A+++ G ++E Sbjct: 87 DVIDAVYIPLPTAQHVEWTIKAANAGKHVLCEKPIALKAEEIDTLIAARDRNGV-IVSEA 145 Query: 131 LMIAFHPWQQALKSIVDSGQFGQLHRIRTRITVPAKDRHAGNYRSVKAKGGGAFADLGCY 190 M+ + P +K ++ SG G L ++ + +R GN R++ GGGA D+G Y Sbjct: 146 FMVTYSPVWAKVKELLASGAIGTLKHVQGAFSY--FNRDPGNMRNIPELGGGALPDIGVY 203 Query: 191 WLQFLQAIVSLQPREIAAQSSFDGPEGCD 219 + +PR + A D G D Sbjct: 204 PTIVTRFATGAEPRRVQATVERDREFGTD 232 >AGc457 [R] COG0673 Predicted dehydrogenases and related proteins Length = 351 Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 3/209 (1%) Query: 11 RLGILGASNIAVPALLEPARYVETVSIAAIANRTFEKAAKLAETYQIPYVAXXXXXXXXX 70 R GI+ + IA ++ + E ++AIA+R +A +AE + +P+ Sbjct: 27 RFGIISTAKIAQDHVIPAIQDAENCVVSAIASRDHARARAVAERFSVPHAFGSYEEMLAS 86 Query: 71 XXXDGVYIALSNELHTEWAVRALNAGKHVLAEKPIALNAEEAERLGMAKEKPGSPKLAEG 130 D VYI L H EW ++A NAGKHVL EKPIAL AEE + L A+++ G ++E Sbjct: 87 DVIDAVYIPLPTAQHVEWTIKAANAGKHVLCEKPIALKAEEIDTLIAARDRNGV-IVSEA 145 Query: 131 LMIAFHPWQQALKSIVDSGQFGQLHRIRTRITVPAKDRHAGNYRSVKAKGGGAFADLGCY 190 M+ + P +K ++ SG G L ++ + +R GN R++ GGGA D+G Y Sbjct: 146 FMVTYSPVWAKVKELLASGAIGTLKHVQGAFSY--FNRDPGNMRNIPELGGGALPDIGVY 203 Query: 191 WLQFLQAIVSLQPREIAAQSSFDGPEGCD 219 + +PR + A D G D Sbjct: 204 PTIVTRFATGAEPRRVQATVERDREFGTD 232 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.134 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,893,256 Number of extensions: 899727 Number of successful extensions: 1763 Number of sequences better than 1.0e-05: 88 Number of HSP's gapped: 1696 Number of HSP's successfully gapped: 88 Length of query: 342 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 235 Effective length of database: 26,037,693 Effective search space: 6118857855 Effective search space used: 6118857855 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 116 (49.3 bits)