BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0049.p (397 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAP0136 [R] COG0535 Predicted Fe-S oxidoreductases 452 e-127 PAB1702 [R] COG0535 Predicted Fe-S oxidoreductases 72 1e-12 TM0824 [R] COG0535 Predicted Fe-S oxidoreductases 71 3e-12 CAC2796 [R] COG0535 Predicted Fe-S oxidoreductases 67 4e-11 PH0827_2 [R] COG0535 Predicted Fe-S oxidoreductases 67 5e-11 >CAP0136 [R] COG0535 Predicted Fe-S oxidoreductases Length = 346 Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust. Identities = 0/389 (0%), Positives = 0/389 (0%), Gaps = 1/389 (0%) Query: 1 MQPTSRVNLDAKSFEALKRTIRNVVIPHRERKHDPGFKTVMPEIMSLKLTNRCNLRCKHC 60 MQ + + T+ H V I + + + + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60 Query: 61 YQWNESGYHHDMDTAEQNLDMDLEMIRKLLQETDEAKSRLYLWGGEPLFHRDTKPILELL 120 Q Y + + + + + + K + R+ Sbjct: 61 TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120 Query: 121 KEHPRDTTICTNAYLIHKYEEELCAISDNLELLIPIEGFEDEHDFLRGRGSFHKVIENVD 180 + + S + R + I + Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN 180 Query: 181 RLVELREQGRFRGRISVHNVINDNMIGRLYELVEFFEQKGVDLVLLCFPWYISAETSLEM 240 + I F + Sbjct: 181 ETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGT 240 Query: 241 DRYYDEHFQWLAELPPDHRSSWHAFKYHIKPGNVPKLTEDLKRINSNTWHNTRIRYQPGL 300 + A S + + V + +R + + + Sbjct: 241 LTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPA-QMALAFVRRQ 299 Query: 301 DFDELEDFVAGRPMASRSTSKCLALSTRVDIAPNGMVSACKFFGELAIGNVNEQSLTEIW 360 Sbjct: 300 359 Query: 361 NSDRYDRLRRILDEGLSPACSKCNVLYLN 389 Sbjct: 360 388 >PAB1702 [R] COG0535 Predicted Fe-S oxidoreductases Length = 346 Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 0/383 (0%), Positives = 0/383 (0%), Gaps = 64/383 (16%) Query: 23 NVVIPHRERKHDP-GFKTVMPEIMSLKLTNRCNLRCKHCYQWNESGYHHDMDTAEQNLDM 81 N R Y Q Sbjct: 95 NDKGIR-----PDQALDRKNIREALHDSLKRLQTDYLDLY----------QVHWPQRPTN 139 Query: 82 DLEMIRKLLQETDEAKS-RLYLWGGEPLFHRDTKPILELLKEHPRDTTICTNAYL-IHKY 139 + ++ A S L + + E + Sbjct: 140 CFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLP 199 Query: 140 EEELCAISD-NLELLIPIEGFEDEHDFLRGRGSFHKVIENVDRLVELREQGRFRGRISVH 198 L + E ++ + L R ++ Sbjct: 200 RIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTL- 258 Query: 199 NVINDNMIGRLYELVEFFEQKGVDLVLLCFPWYISAETSLEMDRYYDEHFQWLAELPPDH 258 EQ + + Sbjct: 259 ---------FSRFTRYSGEQTQKAVAAYV--DIARRHGLDPAQMALAFVRRQPFVASTLL 307 Query: 259 RSSWHAFKYHIKPGNVPKLTEDLKRINSNTWHNTRIRYQPGLDFDELEDFVAGRPMASRS 318 ++ +++ ++ + Sbjct: 308 GATTMDQL-----------KTNIESLH----LELSEDVLAE---------IEAVHQVYTY 343 Query: 319 TSKCLALSTRVDIAPNGMVSACKFF------GELAIGNVNEQSLTEIW-NSDRYDRLRRI 371 Sbjct: 344 403 Query: 372 LDEGLSPACSKCNVLYLNTSAAL 394 Sbjct: 404 -- 424 >TM0824 [R] COG0535 Predicted Fe-S oxidoreductases Length = 346 Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 9/197 (4%), Positives = 28/197 (14%), Gaps = 19/197 (9%) Query: 29 RERKHDPGFKTVMPEIMSLKLTNRCNLRCKHCYQWNESGYHHDMDTAEQNLDMDLEMIRK 88 R +L + + H + Sbjct: 98 GIRPDQ--ALDRKNIREALHDSLKRLQTDYLDL----YQVHW------PQRPTNCFGKLG 145 Query: 89 LLQETDEAKSRLYLW-GGEPLFHRDTKPILELLKEHPRDTTICTNAYLIHKYEEELCAIS 147 L + R K + + + ++ Sbjct: 146 YSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNE--TAFGVMRYLHLADKHDLPRIVT 203 Query: 148 DNLELLIPIEGFEDEHDFLRGRGSFHKVIENVDRLVELREQGRFRGRISVHNVINDNMIG 207 + FE + + + + + + Sbjct: 204 IQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLG---FGTLTGKYLNGAKPAGARNTLFS 260 Query: 208 RLYELVEFFEQKGVDLV 224 R + + Sbjct: 261 RF-TRYSGEQTQKAVAA 276 >CAC2796 [R] COG0535 Predicted Fe-S oxidoreductases Length = 346 Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 6/200 (3%), Positives = 25/200 (12%), Gaps = 18/200 (9%) Query: 31 RKHDPGFKTVMPEIMSLKLTNRCNLRCKHCYQWNESGYHHDMDTAEQNLDMDLEMIRKLL 90 ++ + + N ++ + + + Sbjct: 25 EQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLT--------ETYVGNWLAKH 76 Query: 91 QETDEAKSRLYLW-GGEPLFHRDTKPILELLKEHPRDTTICTNAYLIHKYEEELCAISDN 149 ++ + K + Sbjct: 77 GSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQR 136 Query: 150 LELLIPIEGFEDEHDFLRG-RGSFHKVIENVDRLVELREQGRFRGRISVHNVINDNMIGR 208 G+ + R ++R G Sbjct: 137 PTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMR------YL 190 Query: 209 LYELVEFFEQKGVDLVLLCF 228 + + Sbjct: 191 HLADKHDLPRIVTIQN--PY 208 >PH0827_2 [R] COG0535 Predicted Fe-S oxidoreductases Length = 346 Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 15/356 (4%), Positives = 52/356 (14%), Gaps = 46/356 (12%) Query: 38 KTVMPEIMSLKLTNRCNLRCKHCYQWNESGYHHDMDTAEQNLDMDLEMIRKLL--QETDE 95 M + Q ++ + Q E Sbjct: 18 LGTMTFGEQNSEADAHAQLDYAVAQ-----------GINLIDVAEMYPVPPRPETQGLTE 66 Query: 96 AK-SRLYLWGGEPLFHRDTKPILELLKEHPRDTTICTNAYLIHKYEEELCAISDNLELL- 153 G + + + + + E ++ Sbjct: 67 TYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYL 126 Query: 154 IPIEGFEDE-HDFLRG-RGSFHKVIENVDRLVELREQGRFRGRISVHNVINDNMIGRLYE 211 + + G G L++ + + Sbjct: 127 DLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDT---LDALA---EYQRAGKIRYIGVSN 180 Query: 212 LVEFFEQKGVDLVLLCFPWYIS--AETSLEMDRYYDEHFQWLAELPPDHRSSWHAFKYHI 269 F + + L + + E A+ Sbjct: 181 ETAFGVMRYLHLADK-HDLPRIVTIQNPYSLLNRSFEVGLAEVSQ--YEGVELLAYSCLG 237 Query: 270 KPGNVPKLTEDLKRINSNTWHNTRIRYQPGLD--FDELEDFVAGRPMASRSTSKCLALST 327 K + + + A Sbjct: 238 FGTLTGKYL----NGAKPAGARNTLFSRFTRYSGEQTQKAVAAY----------VDIARR 283 Query: 328 RVDIAPNGMVSACKFFGELAIGNVNEQSLTEIWNSDRYDRLRRILDEGLSPACSKC 383 ++ + + + + ++ + ++ + Sbjct: 284 HGLDPAQMALAFVRRQ-PFVASTLLGATTMDQLKTNIESLHLELSED-VLAEIEAV 337 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.137 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 29,734,966 Number of extensions: 1308574 Number of successful extensions: 2543 Number of sequences better than 1.0e-05: 21 Number of HSP's gapped: 2561 Number of HSP's successfully gapped: 21 Length of query: 397 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 288 Effective length of database: 25,807,025 Effective search space: 7432423200 Effective search space used: 7432423200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 117 (49.7 bits)