BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0340.0037.p
         (684 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MA0813_1 [S] COG1572 Uncharacterized conserved protein                 68   7e-11

>MA0813_1 [S] COG1572 Uncharacterized conserved protein
          Length = 586

 Score = 67.8 bits (164), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 78/148 (52%), Gaps = 3/148 (2%)

Query: 405 PDLTVT-GMTWSPASPAEGSAVTLNAVVKNSGNAASGPTTVNFYLGGELAGSAPVGELAA 463
           PDL +    +WSP +P  G  VT+ A VKN G+AASG TT+  Y+ G       V EL++
Sbjct: 53  PDLVIENDFSWSPTTPEVGEEVTITATVKNQGDAASGATTLALYIDGSSVREWDVSELSS 112

Query: 464 GHSVTVSLNAGTKNAASYALSAKVDESNTVIEQNESNNTYTHPSNLIVAPAASSDLTGTA 523
           G S +VS      +  S  L A VDE N + E NE NN  T  + + VA  +  DL  + 
Sbjct: 113 GESSSVSYTWIPGSEGSVELRAVVDEDNLITESNEGNNEET--ATVTVAENSLPDLIIST 170

Query: 524 SWTPATPVAGSSLGFTVNIKNQGSIASA 551
              P  P +G      +++KN+G+ AS+
Sbjct: 171 FSYPEEPESGEQQRIQISVKNEGTAASS 198



 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 88/198 (44%), Gaps = 14/198 (7%)

Query: 356 YTFNPSSGNSVTLPLSATVKRLQLNITSNSGAPSGQIAEFQVFGSPAPNPDLTVTGMTWS 415
           YT+ P S  SV L   A V    L   SN G  + + A   V  +  P  DL ++  ++ 
Sbjct: 230 YTWVPESEGSVEL--RAVVDEDNLITESNEGN-NEETATVTVTENSLP--DLIISTFSY- 283

Query: 416 PASPAEGSAVTLNAVVKNSGNAASGPTTVNFYLGGELAGSAPVGELAAGHSVTVSLNAGT 475
           P  P  G    +   VKN G A S  T +  Y+ G+L  +  +  L++G    +S N+ T
Sbjct: 284 PEDPEPGEHQRIRVNVKNQGTATSEATMLVLYIDGDLVENWAISRLSSGE---ISYNSYT 340

Query: 476 ---KNAASYALSAKVDESNTVIEQNESNNTYTHPSNLIVAPAASSDLTGTASWTPATPVA 532
               +  +  L A VD+ N V E NE NN  T  + + VA     DL        +    
Sbjct: 341 WIPTSEGTVELKAVVDKDNLVAESNEENNEKT--ATVAVAEDFFPDLIIEDLVPESEGEV 398

Query: 533 GSSLGFTVNIKNQGSIAS 550
           G +L  T+ +KNQG+  S
Sbjct: 399 GKTLNLTLKVKNQGTAPS 416



 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 26/206 (12%)

Query: 351 VTAQSYTFNPSSGNSVTLPLSATVKRLQLNITSNS--GAPSGQIAEFQVFGSPAPNPDLT 408
           ++  SYT+ P+S    T+ L A V +  L   SN      +  +A  + F      PDL 
Sbjct: 334 ISYNSYTWIPTSEG--TVELKAVVDKDNLVAESNEENNEKTATVAVAEDFF-----PDLI 386

Query: 409 VTGMTWSPASPAE-GSAVTLNAVVKNSGNAASGPTTVNFYLGGELAGSAP------VGEL 461
           +  +   P S  E G  + L   VKN G A S      +Y+ G    +AP      V  L
Sbjct: 387 IEDLV--PESEGEVGKTLNLTLKVKNQGTAPSEGVQAEYYING----TAPTQDDIQVPAL 440

Query: 462 AAGHSVTVSLNAGTKNAASYALSAKVDESNTVIEQNESNNTYTHPSNLIVAPAASSDLT- 520
           + G    V  +          +   +D    V E +E+NN +T    ++       DL  
Sbjct: 441 SVGEEKDVMFSLVPDREGQMEVKVHIDSGTDVYELDENNNEFTK---IVDVKTIRPDLII 497

Query: 521 GTASWTPATPVAGSSLGFTVNIKNQG 546
            + S  PA+P  G  + FTV+IKN+G
Sbjct: 498 ESLSLNPASPKVGDDITFTVSIKNKG 523


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.310    0.124    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 44,082,564
Number of extensions: 1755163
Number of successful extensions: 3459
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3456
Number of HSP's successfully gapped: 7
Length of query: 684
Length of database: 38,378,431
Length adjustment: 113
Effective length of query: 571
Effective length of database: 25,345,689
Effective search space: 14472388419
Effective search space used: 14472388419
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 119 (50.4 bits)