BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0035.p (180 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cgl0985 [R] COG0431 Predicted flavoprotein 183 2e-46 mll2599 [R] COG0431 Predicted flavoprotein 120 1e-27 Cgl2851 [R] COG0431 Predicted flavoprotein 104 6e-23 mll5191 [R] COG0431 Predicted flavoprotein 99 3e-21 SMc00183 [R] COG0431 Predicted flavoprotein 85 5e-17 >Cgl0985 [R] COG0431 Predicted flavoprotein Length = 188 Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 97/181 (53%), Positives = 121/181 (66%), Gaps = 8/181 (4%) Query: 6 IGIILGSTRQGRVSPQVGEWVKSIADARGDAHYEIVDIADYKLPLLGESE-----DYAP- 59 I II GSTR GRV+ V WV A R DA YE+VDIAD+ P+L E+ YA Sbjct: 4 IAIITGSTRPGRVNIDVANWVLERAQERNDAQYELVDIADFNFPVLDEAMPAGYGQYANE 63 Query: 60 -AQAWAAKLATLDGFVFIVQEYNHSITGVLKNALDSAREEWNNKAAGIVSYGSAGGARAA 118 +AWAAK+A DGF+F+ EYNHS+ L NAL EWNNKAAGIVSYGSA G RAA Sbjct: 64 HTKAWAAKIAEFDGFIFVTGEYNHSVPAALTNALSYLSAEWNNKAAGIVSYGSAMGVRAA 123 Query: 119 EHLRGILGELLVADVRVHPLLSLFTDFENGSVFKPAALHTPNVNAMLDQVLAWSGALKSL 178 EHLRGIL EL +A V+ LLS+FTDFE + FKP+ +V+AML+Q++ W+ A+ ++ Sbjct: 124 EHLRGILSELQIAHVQKTGLLSIFTDFEYPN-FKPSEQGISSVDAMLEQLVVWTKAMSTI 182 Query: 179 R 179 R Sbjct: 183 R 183 >mll2599 [R] COG0431 Predicted flavoprotein Length = 201 Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 65/141 (46%), Positives = 80/141 (56%), Gaps = 7/141 (4%) Query: 1 MTTLNIGIILGSTRQGRVSPQVGEWVKSIADARGDAHYEIVDIADYKLPLLGE--SEDYA 58 M+ I II+GSTR R + +W+ IA + D E+VD+ D+ LP E S + Sbjct: 1 MSKPKIAIIVGSTRAARFADVPTQWIAKIAKSHADIDVEVVDLRDFPLPFFDEVASSAWV 60 Query: 59 P-----AQAWAAKLATLDGFVFIVQEYNHSITGVLKNALDSAREEWNNKAAGIVSYGSAG 113 P AQ W K+A DGF+F EYNH T VLKNA+D A EWN K AG V YGS G Sbjct: 61 PSTNEVAQRWQKKVAEFDGFIFTAAEYNHGPTAVLKNAIDYAANEWNKKPAGFVGYGSVG 120 Query: 114 GARAAEHLRGILGELLVADVR 134 GARA E LR EL +A V+ Sbjct: 121 GARAVEQLRLHAVELQMAPVK 141 >Cgl2851 [R] COG0431 Predicted flavoprotein Length = 181 Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 85/178 (47%), Gaps = 12/178 (6%) Query: 4 LNIGIILGSTRQGRVSPQVGEWVKSIADARG--DAHYEIVDIADYKLPLL---------G 52 + IG+ILGS R+GR V +WV A D +E++D+ + +PLL Sbjct: 1 MKIGVILGSIREGRFGQGVADWVMEQIGAYDAPDVEFELIDLKAFNVPLLESATVPGSAD 60 Query: 53 ESEDYAPAQAWAAKLATLDGFVFIVQEYNHSITGVLKNALDSAREEWNNKAAGIVSYGSA 112 + D AW+ + D F+FI EYNH + G KNA D EW NK G +SYG+ Sbjct: 61 KQYDDPRVTAWSQAIDACDAFLFITPEYNHGVPGAFKNAYDILGNEWLNKTVGFISYGAV 120 Query: 113 GGARAAEHLRGILGELLVADVRVHPLLSLFTDFENGSVFKPAALHTPNVNAMLDQVLA 170 G R E R I+ + D+R S FT+ NG+ F P + +LD +L Sbjct: 121 EGIRVVEQWRQIVATFNMYDIRSQLSFSTFTENNNGT-FAPNDRRPGELIRLLDSLLT 177 >mll5191 [R] COG0431 Predicted flavoprotein Length = 203 Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 65/189 (34%), Positives = 95/189 (50%), Gaps = 17/189 (8%) Query: 5 NIGIILGSTRQGRVSPQVGEWVKSIADARGDAHYEIVDIADYKLPLLGESE--------- 55 + II+GSTR GR P EW+ + A G + DIA + LP+L E Sbjct: 18 QLNIIIGSTRPGRAGPVFAEWLDTFAREHGKFEPVLTDIAAFHLPVLDEPHHPRLGNYQN 77 Query: 56 DYAPAQAWAAKLATLDGFVFIVQEYNHSITGVLKNALDSAREEWNNKAAGIVSYGS-AGG 114 D+ +AW+ + D FVF+ EYN+ + NA+D EW K A + SYG +GG Sbjct: 78 DHT--KAWSKAIDAADAFVFVAPEYNYFAAPAIVNAIDYLLREWKYKPAAVFSYGGVSGG 135 Query: 115 ARAAEHLRGIL---GELLVADVRVHPLLSLFTDFENGSVFKPAALHTPNVNAMLDQVLAW 171 RAA+ L+ +L G + + + P+ D ENG+ F + AMLD++L W Sbjct: 136 LRAAQALKPLLTSVGIMPIPEGVALPMYQKLLD-ENGA-FNASEQVIGGAKAMLDELLRW 193 Query: 172 SGALKSLRS 180 S ALK +R+ Sbjct: 194 SEALKPMRA 202 >SMc00183 [R] COG0431 Predicted flavoprotein Length = 190 Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 6/180 (3%) Query: 4 LNIGIILGSTRQGRVSPQVGEWVKSIADARGDAHYEIVDIADYKLPLLGESEDYAPAQAW 63 + + +I GS RQGR V W+ I + + + I ++ + PA+ Sbjct: 5 MTLALIYGSARQGRFCDTVASWL--IRELETSDVFSLTIIDPVRMKSARGDKSAGPAEWM 62 Query: 64 AAKLATLDGFVFIVQEYNHSITGVLKNALDSAREEWNNKAAGIVSYGSA-GGARAAEHLR 122 K+A D F+ I EYNH LK +D+ E W+ K VSYG A GG RA E LR Sbjct: 63 ERKVAEADAFIVITPEYNHGYPAALKEMIDAVYEPWHAKPVAFVSYGGASGGIRAVEQLR 122 Query: 123 GILGELLVADVRVH-PLLSLFTDFE-NGSVFKPAALHTPNVNAMLDQVLAWSGALKSLRS 180 + GEL +R ++ F+ G+++KP + P + M+D++ W+ LK R Sbjct: 123 QVFGELHAVTLRDGISFAKAWSKFDAAGNLYKPEEMRAP-LFLMIDRLTWWARTLKYARK 181 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.133 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,000,031 Number of extensions: 558507 Number of successful extensions: 979 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 967 Number of HSP's successfully gapped: 11 Length of query: 180 Length of database: 38,378,431 Length adjustment: 100 Effective length of query: 80 Effective length of database: 26,845,031 Effective search space: 2147602480 Effective search space used: 2147602480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 112 (47.8 bits)