BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0340.0034.p
         (129 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO2333 [P] COG2076 Membrane transporters of cations and cationi...    74   4e-14
SMc01523 [P] COG2076 Membrane transporters of cations and cation...    73   9e-14
BS_ebrA [P] COG2076 Membrane transporters of cations and cationi...    67   4e-12
Z1870 [P] COG2076 Membrane transporters of cations and cationic ...    66   1e-11
ECs1614 [P] COG2076 Membrane transporters of cations and cationi...    66   1e-11

>YPO2333 [P] COG2076 Membrane transporters of cations and cationic drugs
          Length = 112

 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 58/84 (69%)

Query: 3  YLLLAVSIASELLGTSMLKASQGFTRLVPSIVTVVAFVCSFYFLSISLKSIPLNTAYAIW 62
          ++ L ++I +E++ T+MLKAS GF+RLVPS+V V+ +  +F+ LS  +K++PL  AYAIW
Sbjct: 6  FVYLFMAIIAEVVATTMLKASDGFSRLVPSVVVVIGYGIAFWGLSQVVKTMPLGIAYAIW 65

Query: 63 SGLGXXXXXXXXXXXWKEKINTAS 86
          SGLG           +++K++ A+
Sbjct: 66 SGLGIVLVSIAATFMYQQKLDWAA 89


>SMc01523 [P] COG2076 Membrane transporters of cations and cationic drugs
          Length = 113

 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 54/81 (66%)

Query: 3  YLLLAVSIASELLGTSMLKASQGFTRLVPSIVTVVAFVCSFYFLSISLKSIPLNTAYAIW 62
          Y +L ++I  E+LGTS ++A+Q FTRL P+++ V+ +  +F+FLS +L+ IP+  AYA+W
Sbjct: 7  YTVLVIAIVFEVLGTSAMQAAQHFTRLTPTVLMVLCYAVAFFFLSYALRYIPVGIAYALW 66

Query: 63 SGLGXXXXXXXXXXXWKEKIN 83
          SGLG           + +K++
Sbjct: 67 SGLGIVLISIAGYVVFGQKLD 87


>BS_ebrA [P] COG2076 Membrane transporters of cations and cationic drugs
          Length = 105

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 49/83 (59%)

Query: 1  MAYLLLAVSIASELLGTSMLKASQGFTRLVPSIVTVVAFVCSFYFLSISLKSIPLNTAYA 60
          + Y+ L ++I SE +G +MLK S GF +  PS + V+ +  +FY LS++L  IPL+ +YA
Sbjct: 3  IGYIFLTIAICSESIGAAMLKVSDGFKKWKPSALVVIGYSLAFYMLSLTLNHIPLSLSYA 62

Query: 61 IWSGLGXXXXXXXXXXXWKEKIN 83
           WSG G           +KE +N
Sbjct: 63 TWSGAGTVLTTVIGVKWFKEDLN 85


>Z1870 [P] COG2076 Membrane transporters of cations and cationic drugs
          Length = 110

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 47/64 (73%)

Query: 3  YLLLAVSIASELLGTSMLKASQGFTRLVPSIVTVVAFVCSFYFLSISLKSIPLNTAYAIW 62
          Y+ L  +I +E++GT+++K S+GFTRL PS+ T++ +  SF+ L+ +L  IP   AYAIW
Sbjct: 4  YIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIW 63

Query: 63 SGLG 66
          SG+G
Sbjct: 64 SGVG 67


>ECs1614 [P] COG2076 Membrane transporters of cations and cationic drugs
          Length = 110

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 47/64 (73%)

Query: 3  YLLLAVSIASELLGTSMLKASQGFTRLVPSIVTVVAFVCSFYFLSISLKSIPLNTAYAIW 62
          Y+ L  +I +E++GT+++K S+GFTRL PS+ T++ +  SF+ L+ +L  IP   AYAIW
Sbjct: 4  YIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIW 63

Query: 63 SGLG 66
          SG+G
Sbjct: 64 SGVG 67


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.126    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,317,504
Number of extensions: 115551
Number of successful extensions: 290
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 32
Length of query: 129
Length of database: 38,378,431
Length adjustment: 94
Effective length of query: 35
Effective length of database: 27,537,035
Effective search space: 963796225
Effective search space used: 963796225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)