BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0340.0018.p
         (200 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sll0777 [M] COG1876 D-alanyl-D-alanine carboxypeptidase                71   1e-12
sll0034 [M] COG1876 D-alanyl-D-alanine carboxypeptidase                65   9e-11

>sll0777 [M] COG1876 D-alanyl-D-alanine carboxypeptidase
          Length = 305

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 19/138 (13%)

Query: 4   RSIELSKRVTERFSELPAAAAKDGAENFRISSGYRDQEEQGRLY---------KEKGADY 54
           RS  L +     F ++ A A   G     I SG+R    Q  L+         KE  A +
Sbjct: 160 RSESLDQEAATAFKKMQADAQVQGVR-LTIISGFRSIASQDALFQNQIKRKGGKEAAARF 218

Query: 55  ALPAGYSEHNTGLSLDIG---SSLGEIKGSPEG----KWLRANAWNYGFILRYPEDKTNI 107
           + P G+SEH+TG +LDIG   +   ++K + E     +WL  NA  YGF L +P +  N 
Sbjct: 219 SAPPGHSEHHTGYALDIGDGANPANDLKINFENTSAYQWLARNANQYGFELSFPPN--NS 276

Query: 108 TGIKYEAWHFRYVGLPHS 125
            G+ YE WH+RYV  P +
Sbjct: 277 QGVSYEPWHWRYVASPRA 294


>sll0034 [M] COG1876 D-alanyl-D-alanine carboxypeptidase
          Length = 258

 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 23/108 (21%)

Query: 38  RDQEEQGRLYKEKGADYALPAGYSEHNTGLSLDIG----------SSLGEIKGSPEGKWL 87
           R+QE + R      A+ + P GYSEH+TG ++DIG          +S  + K      WL
Sbjct: 154 RNQEARQR------AEVSAPPGYSEHHTGYAVDIGDGSAQATHLSASFAQTKAF---NWL 204

Query: 88  RANAWNYGFILRYPEDKTNITGIKYEAWHFRYVGLPHSLVM--KEKNM 133
           + NA  Y F L +P D  N  GI YE WH+RYVG   SL +  K +N+
Sbjct: 205 QNNAAKYSFELSFPPD--NPQGIAYEPWHWRYVGDRQSLELFYKARNL 250


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.314    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 16,017,394
Number of extensions: 706217
Number of successful extensions: 2934
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2930
Number of HSP's successfully gapped: 2
Length of query: 200
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 99
Effective length of database: 26,729,697
Effective search space: 2646240003
Effective search space used: 2646240003
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)