BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0015.p (229 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0564 [TK] COG0745 Response regulators consisting of a CheY-li... 218 6e-57 BH1153 [TK] COG0745 Response regulators consisting of a CheY-lik... 187 8e-48 CAC0321 [TK] COG0745 Response regulators consisting of a CheY-li... 184 1e-46 BS_yclJ [TK] COG0745 Response regulators consisting of a CheY-li... 181 6e-46 lin2516 [TK] COG0745 Response regulators consisting of a CheY-li... 179 3e-45 >CAC0564 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 233 Score = 218 bits (555), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 102/202 (50%), Positives = 140/202 (69%), Gaps = 2/202 (0%) Query: 26 EGYHTVKVSNGRAAMQAVQSQPVDLAILDIMMPELDGHEVTRQIREQYRMPIIFLSAKAT 85 EG++ +K NG A++ ++ V L +LDIMMP++DG +IRE PII LSAK Sbjct: 26 EGFNVIKAENGVEALEILKDTEVQLVLLDIMMPKMDGITTCMKIREDKNTPIIMLSAKGE 85 Query: 86 DLDKITGLVLGADDYMTKPFNPMELVARVKAQLRRALQLNQPAEDAHAVLQIGGLIIDPD 145 D+DKI GL GADDY++KPFNP+EL+ARVK+Q+RR +LN E A +++G + I+ D Sbjct: 86 DMDKILGLTTGADDYISKPFNPLELIARVKSQIRRYTKLNSTYESNSANIEVGEITINTD 145 Query: 146 KRTVAIYGQTVELTPKEFDILQLLASHPNKVFSAENIFEQVWGESYYDSGNTVMVHIRTL 205 V I +TV LT +EFDIL LL+ + VFS E I+E VW E +YD NTVMVHIR + Sbjct: 146 THEVKIGDRTVSLTKREFDILVLLSRNKGVVFSTEKIYESVWHEEFYDCHNTVMVHIRKI 205 Query: 206 RKKLSEDPKK--FVKTVWGVGY 225 R+K+ ++P+K ++KTVWGVGY Sbjct: 206 REKIEKNPRKPEYIKTVWGVGY 227 >BH1153 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 232 Score = 187 bits (476), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 92/203 (45%), Positives = 137/203 (67%), Gaps = 4/203 (1%) Query: 26 EGYHTVKVSNGRAAMQAVQSQPVDLAILDIMMPELDGHEVTRQIREQYRMPIIFLSAKAT 85 EG + + +G A++ + + + L +LD+MMP LDG + T +IRE +PIIFLSAK+ Sbjct: 27 EGMNVFQAKDGIEALERLNEEDIHLMLLDVMMPRLDGIQTTLKIREARNIPIIFLSAKSE 86 Query: 86 DLDKITGLVLGADDYMTKPFNPMELVARVKAQLRRALQLNQPAEDAHAVLQIGGLIIDPD 145 + DK+ GL +G DDY+TKPFNP+EL+ARVK+QLRR + L E ++ + G+ +D D Sbjct: 87 EADKVLGLQVGGDDYVTKPFNPLELIARVKSQLRRYVNLG-TYEQKKQLINLNGITLDLD 145 Query: 146 KRTVAIYGQTVELTPKEFDILQLLASHPNKVFSAENIFEQVWGE-SYYDSGNTVMVHIRT 204 + V YG+ V+LTP E+ I++LL ++ +VFS I+E+VW E S+ S NTV VHIR Sbjct: 146 AKEVKAYGEPVKLTPIEYRIIELLMTNAGRVFSIAEIYERVWNEPSFQSSENTVAVHIRK 205 Query: 205 LRKKLSEDPK--KFVKTVWGVGY 225 +R+K+ DP + +K VWG+GY Sbjct: 206 IREKIEIDPSNPRHLKVVWGIGY 228 >CAC0321 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 230 Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 88/198 (44%), Positives = 133/198 (67%), Gaps = 3/198 (1%) Query: 35 NGRAAMQAVQSQPVDLAILDIMMPELDGHEVTRQIREQYRMPIIFLSAKATDLDKITGLV 94 +G+ ++A + + +L ILD+M+PE+DG E+ +QIR+ PI+ +SAK D+DKI GL Sbjct: 33 SGKTGLEAAKEKNYELIILDLMLPEIDGFEICKQIRKIKNTPILMVSAKKEDIDKIRGLG 92 Query: 95 LGADDYMTKPFNPMELVARVKAQLRRALQL-NQPAEDAHAVLQIGGLIIDPDKRTVAIYG 153 LGADDYMTKPF+P ELVARVKA + R +L N ++ ++I GL I+ R V + G Sbjct: 93 LGADDYMTKPFSPSELVARVKAHISRYERLVNSSNKNLDDEIEIRGLNINKASRKVFVNG 152 Query: 154 QTVELTPKEFDILQLLASHPNKVFSAENIFEQVWGESYYDSGNTVMVHIRTLRKKLSEDP 213 + + T KEFD+L LA +P++VFS E +F+++WG + TV VHI+ +R+K+ +D Sbjct: 153 KESQFTAKEFDLLVFLAQNPDRVFSKEELFDKIWGMDSFGEIATVTVHIKKIREKIEKDT 212 Query: 214 K--KFVKTVWGVGYTFNG 229 ++++TVWG GY F G Sbjct: 213 SNPEYIETVWGAGYRFRG 230 >BS_yclJ [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 227 Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 93/205 (45%), Positives = 129/205 (62%), Gaps = 2/205 (0%) Query: 25 REGYHTVKVSNGRAAMQAVQSQPVDLAILDIMMPELDGHEVTRQIREQYRMPIIFLSAKA 84 +EG+ V +G Q + DL ILDIM+P +DG + R+IRE +PII L+AK Sbjct: 22 KEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVTICRKIRETSTVPIIMLTAKD 81 Query: 85 TDLDKITGLVLGADDYMTKPFNPMELVARVKAQLRRALQLNQPAEDAHAVLQIGGLIIDP 144 T+ D++ G +GADDY+TKPF+P+ LVAR+KA +RR + D +++ I+ Sbjct: 82 TESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKATGKAVID-EDMIETECFTINK 140 Query: 145 DKRTVAIYGQTVE-LTPKEFDILQLLASHPNKVFSAENIFEQVWGESYYDSGNTVMVHIR 203 R V + G+ VE LTPKEFD+L L +P +VFS E + EQVWG +Y TV VHI+ Sbjct: 141 KTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLLEQVWGYQFYGDERTVDVHIK 200 Query: 204 TLRKKLSEDPKKFVKTVWGVGYTFN 228 LRKKL+ + K F+ TVWGVGY F+ Sbjct: 201 RLRKKLASEDKPFLYTVWGVGYKFD 225 >lin2516 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 231 Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 97/203 (47%), Positives = 127/203 (62%), Gaps = 3/203 (1%) Query: 26 EGYHTVKVSNGRAAMQAVQSQPVDLAILDIMMPELDGHEVTRQIREQYRM-PIIFLSAKA 84 EGY + +G + VQ + L ILDIMMPE++G EV R +R + PI+ LSAKA Sbjct: 25 EGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEVCRLMRNNGILTPILMLSAKA 84 Query: 85 TDLDKITGLVLGADDYMTKPFNPMELVARVKAQLRRALQLNQPAEDAHAVLQIGGLIIDP 144 D DKI GL+ GADDYM KPFNP+EL RVKA LRR Q++Q + + IG +++D Sbjct: 85 EDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQMSQAEPVSQDKVIIGPIVVDR 144 Query: 145 DKRTVAIYGQTVELTPKEFDILQLLASHPNKVFSAENIFEQVWGESYYDSGNTVMVHIRT 204 V + + + LT EFDIL LLAS P +VFS+E IFE++W E + TVMVHI Sbjct: 145 GLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSEYIFEKIWQEKALGASKTVMVHISN 204 Query: 205 LRKKLSE--DPKKFVKTVWGVGY 225 LR KL + + +KT+WGVGY Sbjct: 205 LRDKLRDAMGGENVIKTIWGVGY 227 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,026,636 Number of extensions: 591304 Number of successful extensions: 3362 Number of sequences better than 1.0e-05: 369 Number of HSP's gapped: 3058 Number of HSP's successfully gapped: 369 Length of query: 229 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 126 Effective length of database: 26,499,029 Effective search space: 3338877654 Effective search space used: 3338877654 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)