BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0340.0010.p
         (108 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMb20985 [PR] COG2146 Ferredoxin subunits of nitrite reductase a...    94   7e-20
CC0616 [PR] COG2146 Ferredoxin subunits of nitrite reductase and...    89   2e-18
PA1780 [PR] COG2146 Ferredoxin subunits of nitrite reductase and...    85   2e-17
mlr2863 [PR] COG2146 Ferredoxin subunits of nitrite reductase an...    84   7e-17
SMa1732 [PR] COG2146 Ferredoxin subunits of nitrite reductase an...    57   6e-09

>SMb20985 [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases
          Length = 346

 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 6/103 (5%), Positives = 22/103 (21%), Gaps = 2/103 (1%)

Query: 1   MEMTKMLVGKVTDIDIKGSRIVRVGDHEIALFRLSDGEVLAVENKCPHKGGALSEGMVCG 60
           M+  ++    +    +    +     +  A         +A                   
Sbjct: 1   MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60

Query: 61  SKVHCPLHDWRIDLHTGVVQEPDHGHVVTYEVEVDQSNGSIYL 103
           ++     +        G  ++      V+     +  +  I  
Sbjct: 61  TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNN--DKGIRP 101


>CC0616 [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases
          Length = 346

 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 8/97 (8%), Positives = 14/97 (14%)

Query: 8   VGKVTDIDIKGSRIVRVGDHEIALFRLSDGEVLAVENKCPHKGGALSEGMVCGSKVHCPL 67
                     G+      + E       D  V    N                  +    
Sbjct: 9   SSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETY 68

Query: 68  HDWRIDLHTGVVQEPDHGHVVTYEVEVDQSNGSIYLS 104
               +  H    +      V       D+        
Sbjct: 69  VGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQAL 105


>PA1780 [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases
          Length = 346

 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 5/101 (4%), Positives = 14/101 (13%), Gaps = 2/101 (1%)

Query: 3   MTKMLVGKVTDIDIKGSRIVRVGDHEIALFRLSDGEVLAVENKCPHKGGALSEGMVCGSK 62
           M    +   +               + +          AV         A    +    +
Sbjct: 1   MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60

Query: 63  VHCPLHDWRIDLHTGVVQEPDHGHVVTYEVEVDQSNGSIYL 103
                  +  +                        N    +
Sbjct: 61  TQGLTETYVGNWLAKHGSREKLIIASKVSGPSR--NNDKGI 99


>mlr2863 [PR] COG2146 Ferredoxin subunits of nitrite reductase and
          ring-hydroxylating dioxygenases
          Length = 346

 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 4/93 (4%), Positives = 12/93 (12%)

Query: 3  MTKMLVGKVTDIDIKGSRIVRVGDHEIALFRLSDGEVLAVENKCPHKGGALSEGMVCGSK 62
          M    +   +               + +          AV         A    +    +
Sbjct: 1  MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60

Query: 63 VHCPLHDWRIDLHTGVVQEPDHGHVVTYEVEVD 95
                 +  +                      
Sbjct: 61 TQGLTETYVGNWLAKHGSREKLIIASKVSGPSR 93


>SMa1732 [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases
          Length = 346

 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 5/111 (4%), Positives = 15/111 (13%), Gaps = 17/111 (15%)

Query: 4   TKMLVGKVTDIDIKGSRIVRVGDHEIALFRLSDGEVLAVENKCPHKGGALSEGMVCGSK- 62
              +     ++   G   +  G+        +     AV         A    +    + 
Sbjct: 3   YHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQL-DYAVAQGINLIDVAEMYPVPPRPET 61

Query: 63  ---------------VHCPLHDWRIDLHTGVVQEPDHGHVVTYEVEVDQSN 98
                                     +                    +   
Sbjct: 62  QGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIRE 112


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,243,124
Number of extensions: 297800
Number of successful extensions: 537
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 547
Number of HSP's successfully gapped: 14
Length of query: 108
Length of database: 38,378,431
Length adjustment: 76
Effective length of query: 32
Effective length of database: 29,613,047
Effective search space: 947617504
Effective search space used: 947617504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)