BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0007.p (350 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value aq_2098 [HC] COG0543 2-polyprenylphenol hydroxylase and related ... 122 7e-28 aq_2095 [T] COG1734 DnaK suppressor protein 122 7e-28 aq_2094 [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase 122 7e-28 aq_2093 [O] COG1651 Protein-disulfide isomerase 122 7e-28 aq_2090 [E] COG0119 Isopropylmalate/homocitrate/citramalate synt... 122 7e-28 >aq_2098 [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Length = 346 Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 14/312 (4%), Positives = 49/312 (15%), Gaps = 20/312 (6%) Query: 5 LKEVARGKRGARDLSYQEAESAAEAILGLTASPVQIGAFLIAERIKLESIEELEAFVSVC 64 + G +++ E S A+A L + Q + + ++ Sbjct: 8 HSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTET 67 Query: 65 R-KYAHREPVQQGLDCAGPYDGRKKSXXXXXXXXXXXXXXGLPVTLHGSASLPPKWGITL 123 + + + + Sbjct: 68 YVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLD 127 Query: 124 QDIIQESGIEVTALSRAEMVESAGKSGVLYAHSEAWCPPLASLRHLREDLGMRTIFNTVE 183 + +W ++ L + + Sbjct: 128 LYQVHWPQRPTN---------------CFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGK 172 Query: 184 KFIDYACSPYIVFGIYHNTVFDRISRMILKLGYRKGLVVQGAEGSEDLYIDRPNRVYYVA 243 + + + + D+ + ++ + + + V Sbjct: 173 IRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYE---GVE 229 Query: 244 DGTAHLDIIDPELLGLETPVP-EMDWTPRLQLSAAEAVLQGGGHIAFYNQVLLNGAARLH 302 + Q +A Y + Sbjct: 230 LLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPA 289 Query: 303 LAGKVNSIEEGV 314 + Sbjct: 290 QMALAFVRRQPF 301 >aq_2095 [T] COG1734 DnaK suppressor protein Length = 217 Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 0/312 (0%), Positives = 0/312 (0%), Gaps = 20/312 (6%) Query: 5 LKEVARGKRGARDLSYQEAESAAEAILGLTASPVQIGAFLIAERIKLESIEELEAFVSVC 64 + + L+ + E Sbjct: 8 KSMKIVEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWN 67 Query: 65 R-KYAHREPVQQGLDCAGPYDGRKKSXXXXXXXXXXXXXXGLPVTLHGSASLPPKWGITL 123 + ++ G + P + + Sbjct: 68 GPVEIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLV 127 Query: 124 QDIIQESGIEVTALSRAEMVESAGKSGVLYAHSEAWCPPLASLRHLREDLGMRTIFNTVE 183 +I + + V + A + + L+ + Sbjct: 128 SNIDERMALIVD---------------PMLATGGSVIATIDLLKKAGCSSIKVLVLVAAP 172 Query: 184 KFIDYACSPYIVFGIYHNTVFDRISRMILKLGYRKGLVVQGAEGSEDLYIDRPNRVYYVA 243 Sbjct: 173 --- 229 Query: 244 DGTAHLDIIDPELLGLETPVP-EMDWTPRLQLSAAEAVLQGGGHIAFYNQVLLNGAARLH 302 Sbjct: 230 289 Query: 303 LAGKVNSIEEGV 314 Sbjct: 290 301 >aq_2094 [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase Length = 309 Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 89/312 (28%), Positives = 143/312 (45%), Gaps = 20/312 (6%) Query: 5 LKEVARGKRGARDLSYQEAESAAEAILGLTASPVQIGAFLIAERIKLESIEELEAFVSVC 64 K++ R K +DLS +EA AIL S ++ AFL A RIK E+ EEL + Sbjct: 8 FKKLTRLKDNLQDLSQEEAYEVFRAILEGKLSDIKTTAFLTAMRIKGETSEELLGVIKAI 67 Query: 65 R-KYAHREPVQQGLDCAGPYDGRKKSXXXXXXXXXXXXXXGLPVTLHGSASLPPKWGITL 123 + + + + LD YDG+ ++ G+ T H + P K G+TL Sbjct: 68 KERMNFPQKKEDALDLGLNYDGKNRTIYILPSALWLCSRLGVEFTNHYALGAPTKEGVTL 127 Query: 124 QDIIQESGIEVTALSRAEMVESAGKSGVLYAHSEAWCPPLASLRHLREDLGMRTIFNTVE 183 ++++E G+++ V + + + P L L LR +LG R++ NTVE Sbjct: 128 YEVVKELGVDMN---------------VSFVDQKNYAPELYKLMPLRRELGFRSLINTVE 172 Query: 184 KFIDYACSPYIVFGIYHNTVFDRISRMILKLGYRKGLVVQGAEGSEDLYIDRPNRVYYVA 243 KF++ + IV I+H FD+ + ++ LG +++G EG + DRP V Sbjct: 173 KFLNPFQTKKIVVSIFHKPYFDKNAELLELLGIEDYTIIKGLEGGIEPLPDRPT---LVK 229 Query: 244 DGTAHLDIIDPELLGLETPVP-EMDWTPRLQLSAAEAVLQGGGHIAFYNQVLLNGAARLH 302 ++ I+P+ LGLE P + R L ++ G F+N L L+ Sbjct: 230 KRGKDIESIEPKSLGLEMPKDVHSENVLRDSLEINRKIIDGRERGEFFNWALYTAGVLLY 289 Query: 303 LAGKVNSIEEGV 314 AG+ S+EEGV Sbjct: 290 AAGECESVEEGV 301 >aq_2093 [O] COG1651 Protein-disulfide isomerase Length = 309 Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 89/312 (28%), Positives = 143/312 (45%), Gaps = 20/312 (6%) Query: 5 LKEVARGKRGARDLSYQEAESAAEAILGLTASPVQIGAFLIAERIKLESIEELEAFVSVC 64 K++ R K +DLS +EA AIL S ++ AFL A RIK E+ EEL + Sbjct: 8 FKKLTRLKDNLQDLSQEEAYEVFRAILEGKLSDIKTTAFLTAMRIKGETSEELLGVIKAI 67 Query: 65 R-KYAHREPVQQGLDCAGPYDGRKKSXXXXXXXXXXXXXXGLPVTLHGSASLPPKWGITL 123 + + + + LD YDG+ ++ G+ T H + P K G+TL Sbjct: 68 KERMNFPQKKEDALDLGLNYDGKNRTIYILPSALWLCSRLGVEFTNHYALGAPTKEGVTL 127 Query: 124 QDIIQESGIEVTALSRAEMVESAGKSGVLYAHSEAWCPPLASLRHLREDLGMRTIFNTVE 183 ++++E G+++ V + + + P L L LR +LG R++ NTVE Sbjct: 128 YEVVKELGVDMN---------------VSFVDQKNYAPELYKLMPLRRELGFRSLINTVE 172 Query: 184 KFIDYACSPYIVFGIYHNTVFDRISRMILKLGYRKGLVVQGAEGSEDLYIDRPNRVYYVA 243 KF++ + IV I+H FD+ + ++ LG +++G EG + DRP V Sbjct: 173 KFLNPFQTKKIVVSIFHKPYFDKNAELLELLGIEDYTIIKGLEGGIEPLPDRPT---LVK 229 Query: 244 DGTAHLDIIDPELLGLETPVP-EMDWTPRLQLSAAEAVLQGGGHIAFYNQVLLNGAARLH 302 ++ I+P+ LGLE P + R L ++ G F+N L L+ Sbjct: 230 KRGKDIESIEPKSLGLEMPKDVHSENVLRDSLEINRKIIDGRERGEFFNWALYTAGVLLY 289 Query: 303 LAGKVNSIEEGV 314 AG+ S+EEGV Sbjct: 290 AAGECESVEEGV 301 >aq_2090 [E] COG0119 Isopropylmalate/homocitrate/citramalate synthases Length = 309 Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 89/312 (28%), Positives = 143/312 (45%), Gaps = 20/312 (6%) Query: 5 LKEVARGKRGARDLSYQEAESAAEAILGLTASPVQIGAFLIAERIKLESIEELEAFVSVC 64 K++ R K +DLS +EA AIL S ++ AFL A RIK E+ EEL + Sbjct: 8 FKKLTRLKDNLQDLSQEEAYEVFRAILEGKLSDIKTTAFLTAMRIKGETSEELLGVIKAI 67 Query: 65 R-KYAHREPVQQGLDCAGPYDGRKKSXXXXXXXXXXXXXXGLPVTLHGSASLPPKWGITL 123 + + + + LD YDG+ ++ G+ T H + P K G+TL Sbjct: 68 KERMNFPQKKEDALDLGLNYDGKNRTIYILPSALWLCSRLGVEFTNHYALGAPTKEGVTL 127 Query: 124 QDIIQESGIEVTALSRAEMVESAGKSGVLYAHSEAWCPPLASLRHLREDLGMRTIFNTVE 183 ++++E G+++ V + + + P L L LR +LG R++ NTVE Sbjct: 128 YEVVKELGVDMN---------------VSFVDQKNYAPELYKLMPLRRELGFRSLINTVE 172 Query: 184 KFIDYACSPYIVFGIYHNTVFDRISRMILKLGYRKGLVVQGAEGSEDLYIDRPNRVYYVA 243 KF++ + IV I+H FD+ + ++ LG +++G EG + DRP V Sbjct: 173 KFLNPFQTKKIVVSIFHKPYFDKNAELLELLGIEDYTIIKGLEGGIEPLPDRPT---LVK 229 Query: 244 DGTAHLDIIDPELLGLETPVP-EMDWTPRLQLSAAEAVLQGGGHIAFYNQVLLNGAARLH 302 ++ I+P+ LGLE P + R L ++ G F+N L L+ Sbjct: 230 KRGKDIESIEPKSLGLEMPKDVHSENVLRDSLEINRKIIDGRERGEFFNWALYTAGVLLY 289 Query: 303 LAGKVNSIEEGV 314 AG+ S+EEGV Sbjct: 290 AAGECESVEEGV 301 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 25,268,882 Number of extensions: 958513 Number of successful extensions: 1955 Number of sequences better than 1.0e-05: 35 Number of HSP's gapped: 1897 Number of HSP's successfully gapped: 35 Length of query: 350 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 243 Effective length of database: 26,037,693 Effective search space: 6327159399 Effective search space used: 6327159399 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 116 (49.3 bits)