BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0005.p (237 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value yeiL [T] COG0664 cAMP-binding proteins - catabolite gene activat... 74 2e-13 ZyeiL [T] COG0664 cAMP-binding proteins - catabolite gene activa... 74 2e-13 ECs3055 [T] COG0664 cAMP-binding proteins - catabolite gene acti... 74 2e-13 BMEII0986 [T] COG0664 cAMP-binding proteins - catabolite gene ac... 70 2e-12 >yeiL [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Length = 219 Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 8/205 (3%) Query: 22 IFNEQLSGHLHLYSFAQGEHICSKGDPSGYLYVLVKGKLKIFTTTPEGKMLIISFKTPLE 81 F +S L+ F ++I +G +L+ L +G+ +++ T G++ +I F Sbjct: 9 CFLTDVSADTRLFHFLARDYIVQEGQQPSWLFYLTRGRARLYATLANGRVSLIDFFAAPC 68 Query: 82 LIGDVEYIQGTEMINTVEAVSPVHMLGIEYRWLNKYGRDYPPLLHFMLEMITHKFYRKSN 141 IG++E I V+A+ L + + + L + ++HK YR Sbjct: 69 FIGEIELIDKDHEPRAVQAIEECWCLALPMKHYRPLLLNDTLFLRKLCVTLSHKNYRNIV 128 Query: 142 FLSLNLMHPVEVRLASYLLSISYDESDPNFTGQLSTINLTDTANFIGTSYRHLNRVIYKL 201 L+ N P+ RLA+++L +S + G L T A ++G SYRHL V+ + Sbjct: 129 SLTQNQSFPLVNRLAAFIL-LSQE-------GDLYHEKHTQAAEYLGVSYRHLLYVLAQF 180 Query: 202 TQDGLIERGNGHLLVKDKAGLAALA 226 DGL+ + L+K++ L+ LA Sbjct: 181 IHDGLLIKSKKGYLIKNRKQLSGLA 205 >ZyeiL [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Length = 219 Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 8/205 (3%) Query: 22 IFNEQLSGHLHLYSFAQGEHICSKGDPSGYLYVLVKGKLKIFTTTPEGKMLIISFKTPLE 81 F +S L+ F ++I +G +L+ L +G+ +++ T G++ +I F Sbjct: 9 CFLTDVSADTRLFHFLARDYIVQEGQQPSWLFYLTRGRARLYATLANGRVSLIDFFAAPC 68 Query: 82 LIGDVEYIQGTEMINTVEAVSPVHMLGIEYRWLNKYGRDYPPLLHFMLEMITHKFYRKSN 141 IG++E I V+A+ L + + + L + ++HK YR Sbjct: 69 FIGEIELIDKDHEPRAVQAIEECWCLALPMKHYRPLLLNDTLFLRKLCVTLSHKNYRNIV 128 Query: 142 FLSLNLMHPVEVRLASYLLSISYDESDPNFTGQLSTINLTDTANFIGTSYRHLNRVIYKL 201 L+ N P+ RLA+++L +S + G L T A ++G SYRHL V+ + Sbjct: 129 SLTQNQSFPLVNRLAAFIL-LSQE-------GDLYHEKHTQAAEYLGVSYRHLLYVLAQF 180 Query: 202 TQDGLIERGNGHLLVKDKAGLAALA 226 DGL+ + L+K++ L+ LA Sbjct: 181 IHDGLLIKSKKGYLIKNRKQLSGLA 205 Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 8/205 (3%) Query: 22 IFNEQLSGHLHLYSFAQGEHICSKGDPSGYLYVLVKGKLKIFTTTPEGKMLIISFKTPLE 81 F +S L+ F ++I +G +L+ L +G+ +++ T G++ +I F Sbjct: 9 CFLTDVSADTRLFHFLARDYIVQEGQQPSWLFYLTRGRARLYATLANGRVSLIDFFAAPC 68 Query: 82 LIGDVEYIQGTEMINTVEAVSPVHMLGIEYRWLNKYGRDYPPLLHFMLEMITHKFYRKSN 141 IG++E I V+A+ L + + + L + ++HK YR Sbjct: 69 FIGEIELIDKDHEPRAVQAIEECWCLALPMKHYRPLLLNDTLFLRKLCVTLSHKNYRNIV 128 Query: 142 FLSLNLMHPVEVRLASYLLSISYDESDPNFTGQLSTINLTDTANFIGTSYRHLNRVIYKL 201 L+ N P+ RLA+++L +S + G L T A ++G SYRHL V+ + Sbjct: 129 SLTQNQSFPLVNRLAAFIL-LSQE-------GDLYHEKHTQAAEYLGVSYRHLLYVLAQF 180 Query: 202 TQDGLIERGNGHLLVKDKAGLAALA 226 DGL+ + L+K++ L+ LA Sbjct: 181 IHDGLLIKSKKGYLIKNRKQLSGLA 205 >ECs3055 [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Length = 219 Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 8/205 (3%) Query: 22 IFNEQLSGHLHLYSFAQGEHICSKGDPSGYLYVLVKGKLKIFTTTPEGKMLIISFKTPLE 81 F +S L+ F ++I +G +L+ L +G+ +++ T G++ +I F Sbjct: 9 CFLTDVSADTRLFHFLARDYIVQEGQQPSWLFYLTRGRARLYATLANGRVSLIDFFAAPC 68 Query: 82 LIGDVEYIQGTEMINTVEAVSPVHMLGIEYRWLNKYGRDYPPLLHFMLEMITHKFYRKSN 141 IG++E I V+A+ L + + + L + ++HK YR Sbjct: 69 FIGEIELIDKDHEPRAVQAIEECWCLALPMKHYRPLLLNDTLFLRKLCVTLSHKNYRNIV 128 Query: 142 FLSLNLMHPVEVRLASYLLSISYDESDPNFTGQLSTINLTDTANFIGTSYRHLNRVIYKL 201 L+ N P+ RLA+++L +S + G L T A ++G SYRHL V+ + Sbjct: 129 SLTQNQSFPLVNRLAAFIL-LSQE-------GDLYHEKHTQAAEYLGVSYRHLLYVLAQF 180 Query: 202 TQDGLIERGNGHLLVKDKAGLAALA 226 DGL+ + L+K++ L+ LA Sbjct: 181 IHDGLLIKSKKGYLIKNRKQLSGLA 205 >BMEII0986 [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Length = 231 Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 2/191 (1%) Query: 38 QGEHICSKGDPSGYLYVLVKGKLKIFTTTPEGKMLIISFKTPLELIGDVEYIQGTEMINT 97 QGE I +GD + Y+L+ G+LK+ TP+G+ +I+ P +L G +Q + T Sbjct: 37 QGESIFEQGDEASCFYLLLHGRLKVNQVTPDGQQIIVRMVHPGDLFGFARALQRNDYPGT 96 Query: 98 VEAVSPVHMLGIEYRWLNKYGRDYPPLLHFMLEMITHKFYRKSNFLSLNLMHPVEVRLAS 157 AV +L + + P L ++ I + + VE R+A Sbjct: 97 ATAVMESIVLAWPTELWDYFVEQNPGLAMNAIQTIGKRLEEAHTRIREMSTEEVERRVAH 156 Query: 158 YLLSISYDESDPNFTGQLST--INLTDTANFIGTSYRHLNRVIYKLTQDGLIERGNGHLL 215 +L +S TG I+ D A GT+ ++R++ GL++ G LL Sbjct: 157 AVLRLSRQAGKKEETGIRIDFPISRQDIAEMTGTTLHTVSRILSNWETKGLVQGGRQKLL 216 Query: 216 VKDKAGLAALA 226 V D AGL LA Sbjct: 217 VLDSAGLRRLA 227 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,861,454 Number of extensions: 763600 Number of successful extensions: 1095 Number of sequences better than 1.0e-05: 28 Number of HSP's gapped: 1102 Number of HSP's successfully gapped: 28 Length of query: 237 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 134 Effective length of database: 26,499,029 Effective search space: 3550869886 Effective search space used: 3550869886 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)