BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0340.0004.p
         (141 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all7166 [S] COG3238 Uncharacterized protein conserved in bacteria      47   8e-06

>all7166 [S] COG3238 Uncharacterized protein conserved in bacteria
          Length = 157

 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 3/130 (2%)

Query: 15  TLQGVANARISQDIGTWQA-ATITQFTGF-VMALMILLFVRDAKKQGFKQVSPLYLF-GG 71
           T+   ANA++   + +  A ATI    GF ++ L+++L +    K     V+P + F GG
Sbjct: 18  TIGAAANAQLKTILDSPIASATINFVVGFSILTLLLVLGIFKPYKLDLLSVTPWWAFLGG 77

Query: 72  ALAAFIIFSEVTAIQGIGVTLTISALLIAQLCLTFLIDIKGWFGVVKQKMRLPQFIGIGM 131
            L A  +      +  +G+T T   ++ +Q+ ++ +ID  GWF  +K  +  P+ +GI  
Sbjct: 78  LLGAIFVTLSTLIVPKLGLTTTTLVVVFSQMFMSLVIDQLGWFCAIKYPITTPKILGIAT 137

Query: 132 MVAGVVILKL 141
           +V  + I +L
Sbjct: 138 LVVAIAINQL 147


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.332    0.144    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,885,663
Number of extensions: 244418
Number of successful extensions: 935
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 936
Number of HSP's successfully gapped: 2
Length of query: 141
Length of database: 38,378,431
Length adjustment: 96
Effective length of query: 45
Effective length of database: 27,306,367
Effective search space: 1228786515
Effective search space used: 1228786515
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 110 (47.0 bits)