BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0337.0009.p
         (121 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L108503 [K] COG1695 Predicted transcriptional regulators              100   7e-22
DR1954 [K] COG1695 Predicted transcriptional regulators                70   9e-13
DR2079 [K] COG1695 Predicted transcriptional regulators                66   1e-11
mll2486 [K] COG1695 Predicted transcriptional regulators               58   3e-09
CC3408 [K] COG1695 Predicted transcriptional regulators                57   5e-09

>L108503 [K] COG1695 Predicted transcriptional regulators
          Length = 116

 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 67/104 (64%)

Query: 17  KITSDLLRGHTDTMILRLLSEADRYGYEIVKLIAERSDGEYELKEATMYSSVRRLEADGD 76
           +I  ++LR  T+ ++L +L + D Y Y I+K + E S+GE EL EAT+Y+  +RLE DG 
Sbjct: 3   EIPKEMLRAQTNVILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGI 62

Query: 77  IEWYWGDESQGGRRKYFRITEKGKAAYARNKSNWEYAKRVLENL 120
           I  YWGDESQGGRRKY+R+TE G         +W     ++ENL
Sbjct: 63  ISSYWGDESQGGRRKYYRLTEIGHENMRLAFESWSRVDEIIENL 106


>DR1954 [K] COG1695 Predicted transcriptional regulators
          Length = 107

 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 59/95 (62%), Gaps = 1/95 (1%)

Query: 18  ITSDLLRGHTDTMILRLLSEADRYGYEIVKLIAERSDGEYELKEATMYSSVRRLEADGDI 77
           +  DLLRG+ D ++L +L     YG+ I++   +R+DG +E KE ++Y ++ RLE DG +
Sbjct: 1   MNPDLLRGNLDLILLSILERRPLYGFAIIQEAKDRTDGYFEFKEGSLYPALHRLEVDGLL 60

Query: 78  EWYWGDESQGGR-RKYFRITEKGKAAYARNKSNWE 111
              +G+  + G+ RKY+ IT+ G+   A+ +  ++
Sbjct: 61  AAQFGEAGRNGKPRKYYAITDLGRQRLAQKREEFQ 95


>DR2079 [K] COG1695 Predicted transcriptional regulators
          Length = 134

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 7/115 (6%)

Query: 11  INMSENKITSDLLRGHTDTMILRLLSEADRYGYEIVKLIAERSDGEYELKEATMYSSVRR 70
           + M    +  +LLRG  D ++L  L +   YG  I++ + +R+DG +  KE T+Y ++ R
Sbjct: 17  VVMQGKDLDGNLLRGTLDFLLLASLEDGPLYGLRIIQDVQDRTDGHFRFKEGTLYPALHR 76

Query: 71  LEADGDIEWYWGDE----SQGGRRKYFRITEKGKAAYARNKSNWEYAKRVLENLL 121
           LE  G   W  G++    + G  RKY+ +TE GK   AR +       R L   L
Sbjct: 77  LEKRG---WIVGEQRPSDAGGPPRKYYELTEGGKTELARQREQQRAHARALAPYL 128


>mll2486 [K] COG1695 Predicted transcriptional regulators
          Length = 108

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 8/109 (7%)

Query: 16  NKITSDLLRGHTDTMILRLLSEADRYGYEIVKLIAERSDGEYELKEATMYSSVRRLEADG 75
           + I   L +G  D  +L +LS  + YGYEI   +         + E T+Y  +RR++ DG
Sbjct: 3   DSILVQLRKGALDLCVLAVLSRGESYGYEIASTLV----AAVNMGEGTIYPLMRRMQNDG 58

Query: 76  DIEWYWGDESQGGRRKYFRITEKGKAAYARNKSNWE----YAKRVLENL 120
            +     + S G  RKY+R+T  G+ A+  ++ +W        R+LE+L
Sbjct: 59  LVATRLVESSSGPPRKYYRLTPLGQQAFEAHRRDWRSFAGAVDRLLEDL 107


>CC3408 [K] COG1695 Predicted transcriptional regulators
          Length = 108

 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 4/86 (4%)

Query: 36  SEADRYGYEIVKLIAERSDGEYELKEATMYSSVRRLEADGDIEWYWGDESQGGRRKYFRI 95
           S AD Y YEI    A R   + ++ E T+Y  +RR+++DG +E Y  +   G  RKY+R+
Sbjct: 23  SHADSYAYEI----ASRLTRDIDMGEGTIYPLMRRMQSDGLVETYLVESQSGPPRKYYRL 78

Query: 96  TEKGKAAYARNKSNWEYAKRVLENLL 121
           T  G+ + A+ K+ W      + N++
Sbjct: 79  TAAGRESLAQQKAEWTAFATAVNNIV 104


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,964,121
Number of extensions: 315466
Number of successful extensions: 526
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 21
Length of query: 121
Length of database: 38,378,431
Length adjustment: 87
Effective length of query: 34
Effective length of database: 28,344,373
Effective search space: 963708682
Effective search space used: 963708682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 109 (46.6 bits)