BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0337.0008.p
         (168 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0763 [K] COG1846 Transcriptional regulators                         77   1e-14
lin0831 [K] COG1846 Transcriptional regulators                         64   8e-11
L106489 [K] COG1846 Transcriptional regulators                         63   2e-10
L115025 [K] COG1846 Transcriptional regulators                         54   2e-07
MA0743 [K] COG1846 Transcriptional regulators                          49   4e-06

>CAC0763 [K] COG1846 Transcriptional regulators
          Length = 157

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 66/112 (58%)

Query: 50  TAVHVIDCIGRHEPINSTAIAGKMELSKASITKIGGKLLADGLVERMQLNDNKKESYFRL 109
           + VH I+CIG++   N T +A  + +++ +I+K+  KL+   +VE  Q  DNKKE YFRL
Sbjct: 36  SEVHYIECIGKNVDSNVTKLAKSLYMTRGAISKMTKKLIEKNIVESYQKADNKKEIYFRL 95

Query: 110 TPQGKKIFDLHERIHANEAERLNRFLSKYSAGELKIIGSFLKDYSAEMEVRI 161
           T +G +I+ LHE +H    ER      + +  + + + SF++ YS  ++  I
Sbjct: 96  TEKGHEIYKLHENLHKEFQERDKVVFEQVTDEQFESMLSFIEKYSKHLDSEI 147


>lin0831 [K] COG1846 Transcriptional regulators
          Length = 156

 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 61/112 (54%)

Query: 50  TAVHVIDCIGRHEPINSTAIAGKMELSKASITKIGGKLLADGLVERMQLNDNKKESYFRL 109
           + VH I+ I ++E  N T +A    ++K++I+KI  KL+  G +E  Q  +NKKE YFRL
Sbjct: 36  SEVHCIEFIAKNEDPNVTKLAEAFYMTKSAISKITKKLMDKGYIESYQKPENKKEIYFRL 95

Query: 110 TPQGKKIFDLHERIHANEAERLNRFLSKYSAGELKIIGSFLKDYSAEMEVRI 161
           T +G +I  +H+ +H    +R        S  + + +  F+  YS  ++  +
Sbjct: 96  TTKGAEINQVHDNLHQEFLDRDKVVFEDVSDKQYEEVLQFVDKYSRHLDAEM 147


>L106489 [K] COG1846 Transcriptional regulators
          Length = 159

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 61/119 (51%)

Query: 49  ITAVHVIDCIGRHEPINSTAIAGKMELSKASITKIGGKLLADGLVERMQLNDNKKESYFR 108
           ++ +  I+ I +    N T +A  + +++ + +KI  KLL   LVE  Q+  NKKE YFR
Sbjct: 41  LSEIETIEFIAKTPYPNVTKLAHHLYMTRGAASKIAKKLLKKNLVESYQIPQNKKEIYFR 100

Query: 109 LTPQGKKIFDLHERIHANEAERLNRFLSKYSAGELKIIGSFLKDYSAEMEVRISEGTAK 167
           LT +G++I D HE +H   +E+      + +   +  I  FL  Y+  ++  I     K
Sbjct: 101 LTKEGQEINDRHESLHQKFSEKDQVIFDELTDESVSNILKFLNKYNNHLDSAIRNNIEK 159


>L115025 [K] COG1846 Transcriptional regulators
          Length = 163

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 59/107 (55%), Gaps = 1/107 (0%)

Query: 48  NITAVHVIDCIGRHEPINSTAIAGKMELSKASITKIGGKLLADGLVERMQLNDNKKESYF 107
           ++ A+H++  + + E +    +A K+ +++  +T+    L+    +   Q   +KK+ ++
Sbjct: 48  SVVALHILSALTK-EDLTGIELATKLSVTRGGVTRAVQNLIKYQFLTTYQSESDKKKIFY 106

Query: 108 RLTPQGKKIFDLHERIHANEAERLNRFLSKYSAGELKIIGSFLKDYS 154
            LT +G+K+  +H+++H     RL +   KY+  E  II SFL D++
Sbjct: 107 HLTVKGRKVATIHDKMHKIMDIRLGQIFDKYNEQEKSIILSFLSDFN 153


>MA0743 [K] COG1846 Transcriptional regulators
          Length = 196

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 45/72 (62%)

Query: 53  HVIDCIGRHEPINSTAIAGKMELSKASITKIGGKLLADGLVERMQLNDNKKESYFRLTPQ 112
           H+I+ +G++   N  +IA  + +++ +I+++  KL   GLV+R++  +NKK     LT  
Sbjct: 84  HIIEVVGKYPEKNLASIASHLGVTRGAISQMVRKLEKKGLVKRVRTPNNKKNIMLELTGF 143

Query: 113 GKKIFDLHERIH 124
           GK+ F+ H+ +H
Sbjct: 144 GKEAFEWHKALH 155


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.135    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,407,619
Number of extensions: 412282
Number of successful extensions: 950
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 954
Number of HSP's successfully gapped: 7
Length of query: 168
Length of database: 38,378,431
Length adjustment: 99
Effective length of query: 69
Effective length of database: 26,960,365
Effective search space: 1860265185
Effective search space used: 1860265185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)