BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0337.0002.p (250 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF0086 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transp... 138 9e-33 ZtauC [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transpo... 107 2e-23 tauC [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transpor... 107 2e-23 ZtauC [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transpo... 103 2e-22 ECs0421 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 103 2e-22 >AF0086 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 244 Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 3/235 (1%) Query: 14 LFVFLGMNLVWYIAYLLMHHPILPSPGAVYEAMFQLGAKDVALNVGYSLLRIFEGVXXXX 73 L + L+W A L+ +P LP+P V + L K++ + SL+R+ + Sbjct: 12 LITLASLLLIWAAASYLLQNPALPNPLDVLALI--LTRKELITHTAVSLIRVVYSLALAL 69 Query: 74 XXXXXXXXXMGRSPLWNRLLDPVVYLTYPIPKIALLPVVMLFFGLGETSKVLMIMLILLF 133 + R + + + P++YL YPIP I LLP+ +L FG+G+ S+VL+I IL F Sbjct: 70 SVALPAGI-LSRERVVDATISPIIYLLYPIPHIVLLPLYILLFGIGDLSRVLLIATILFF 128 Query: 134 QVIISVRDGVKAIPESTYDVLTSIGASTGQKFWNVTLPGALSVILSTIRISLGTAISVLF 193 Q+ ++ RD K + + + S+GAS + +V +P + IL+ +RIS+GTAI+VLF Sbjct: 129 QIAVTTRDAAKQVSDYYVYSILSLGASKIDIYRHVIIPAVMPKILTALRISIGTAIAVLF 188 Query: 194 FTEIYGTEHGMGFFIMDAWLRLDYPEMYAGIMXXXXXXXXXXXXXDVMDYKFMKW 248 F E + T G+G+ I+D+W R DY MYA I + + + +W Sbjct: 189 FAESFATTSGLGYLIIDSWSRADYTTMYAAITTMALLGFALYVIVESAERRVCRW 243 >ZtauC [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 275 Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/195 (35%), Positives = 101/195 (51%), Gaps = 7/195 (3%) Query: 24 WYIAYLLMHHPI-LPSPGAVYEAMFQL----GAKDVAL--NVGYSLLRIFEGVXXXXXXX 76 W +A L + P+ LP P V E + + G D L ++ SL RI + Sbjct: 39 WTVATLQLISPLFLPPPQQVLEKLLTIAGPQGFMDATLWQHLAASLTRIMLALFAAVLFG 98 Query: 77 XXXXXXMGRSPLWNRLLDPVVYLTYPIPKIALLPVVMLFFGLGETSKVLMIMLILLFQVI 136 MG SP +LDP++ L P+P +A LP+++++FG+GETSK+L+I L + V Sbjct: 99 IPVGIAMGLSPTVRGILDPIIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVA 158 Query: 137 ISVRDGVKAIPESTYDVLTSIGASTGQKFWNVTLPGALSVILSTIRISLGTAISVLFFTE 196 +S GVK++ + S+GAS Q W V LPGAL IL+ +RI LG S L E Sbjct: 159 MSALAGVKSVQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAE 218 Query: 197 IYGTEHGMGFFIMDA 211 + G+GF + A Sbjct: 219 LIAATRGLGFMVQSA 233 >tauC [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 275 Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/195 (35%), Positives = 101/195 (51%), Gaps = 7/195 (3%) Query: 24 WYIAYLLMHHPI-LPSPGAVYEAMFQL----GAKDVAL--NVGYSLLRIFEGVXXXXXXX 76 W +A L + P+ LP P V E + + G D L ++ SL RI + Sbjct: 39 WTVATLQLISPLFLPPPQQVLEKLLTIAGPQGFMDATLWQHLAASLTRIMLALFAAVLFG 98 Query: 77 XXXXXXMGRSPLWNRLLDPVVYLTYPIPKIALLPVVMLFFGLGETSKVLMIMLILLFQVI 136 MG SP +LDP++ L P+P +A LP+++++FG+GETSK+L+I L + V Sbjct: 99 IPVGIAMGLSPTVRGILDPIIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVA 158 Query: 137 ISVRDGVKAIPESTYDVLTSIGASTGQKFWNVTLPGALSVILSTIRISLGTAISVLFFTE 196 +S GVK++ + S+GAS Q W V LPGAL IL+ +RI LG S L E Sbjct: 159 MSALAGVKSVQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAE 218 Query: 197 IYGTEHGMGFFIMDA 211 + G+GF + A Sbjct: 219 LIAATRGLGFMVQSA 233 Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/195 (35%), Positives = 101/195 (51%), Gaps = 7/195 (3%) Query: 24 WYIAYLLMHHPI-LPSPGAVYEAMFQL----GAKDVAL--NVGYSLLRIFEGVXXXXXXX 76 W +A L + P+ LP P V E + + G D L ++ SL RI + Sbjct: 39 WTVATLQLISPLFLPPPQQVLEKLLTIAGPQGFMDATLWQHLAASLTRIMLALFAAVLFG 98 Query: 77 XXXXXXMGRSPLWNRLLDPVVYLTYPIPKIALLPVVMLFFGLGETSKVLMIMLILLFQVI 136 MG SP +LDP++ L P+P +A LP+++++FG+GETSK+L+I L + V Sbjct: 99 IPVGIAMGLSPTVRGILDPIIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVA 158 Query: 137 ISVRDGVKAIPESTYDVLTSIGASTGQKFWNVTLPGALSVILSTIRISLGTAISVLFFTE 196 +S GVK++ + S+GAS Q W V LPGAL IL+ +RI LG S L E Sbjct: 159 MSALAGVKSVQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAE 218 Query: 197 IYGTEHGMGFFIMDA 211 + G+GF + A Sbjct: 219 LIAATRGLGFMVQSA 233 >ECs0421 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 275 Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/195 (34%), Positives = 99/195 (50%), Gaps = 7/195 (3%) Query: 24 WYIAYLLMHHPI-LPSPGAVYEAMFQL----GAKDVAL--NVGYSLLRIFEGVXXXXXXX 76 W +A L + P+ LP P V + + G D L ++ SL RI + Sbjct: 39 WTVAALQLISPLFLPPPQQVLAKLLTIAGPQGFMDATLWQHLAASLTRIVLALLAAVLIG 98 Query: 77 XXXXXXMGRSPLWNRLLDPVVYLTYPIPKIALLPVVMLFFGLGETSKVLMIMLILLFQVI 136 MG SP +LDP++ L P+P +A LP+++++FG+GETSK+L+I L + V Sbjct: 99 IPVGIAMGLSPTVRGILDPIIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVA 158 Query: 137 ISVRDGVKAIPESTYDVLTSIGASTGQKFWNVTLPGALSVILSTIRISLGTAISVLFFTE 196 +S GVK+ + S+GAS Q W V LPGAL IL+ +RI LG S L E Sbjct: 159 MSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAE 218 Query: 197 IYGTEHGMGFFIMDA 211 + G+GF + A Sbjct: 219 LIAATRGLGFMVQSA 233 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.146 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,305,359 Number of extensions: 606437 Number of successful extensions: 1991 Number of sequences better than 1.0e-05: 84 Number of HSP's gapped: 1977 Number of HSP's successfully gapped: 84 Length of query: 250 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 146 Effective length of database: 26,383,695 Effective search space: 3852019470 Effective search space used: 3852019470 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 114 (48.5 bits)