BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0335.0010.p
         (216 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MA0364 [K] COG1309 Transcriptional regulator                           74   2e-13
NMA0364 [E] COG0665 Glycine/D-amino acid oxidases (deaminating)        74   2e-13
RSc0012 [K] COG1309 Transcriptional regulator                          61   1e-09
CC0772 [K] COG1309 Transcriptional regulator                           59   7e-09
DR0074 [K] COG1309 Transcriptional regulator                           56   4e-08

>MA0364 [K] COG1309 Transcriptional regulator
          Length = 192

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 97/192 (50%), Gaps = 6/192 (3%)

Query: 2   RISKEPIERRNEILDTAEGLFFTKGYNKTTVNDILQEIGIAKGTFYYYFKSKEEVMDAVV 61
           R++K   ER  EI+DTA+ LF   G++KT ++DI + + +A+G  Y+YFKSK E++ AV+
Sbjct: 3   RVTKTVEERHQEIIDTAKALFMENGFDKTQISDIAKRMNVAQGLVYHYFKSKTEMLYAVI 62

Query: 62  MRFIEXXXXXXXXXXSDPKLTVHDKLLQIIMAQKPDTVRKEKMIEQFHEAENAQIHQKSL 121
               E          +  + T  +K L ++++ K ++    K++     ++ A I   S+
Sbjct: 63  DELAEEKQKEMETVMNRTESTALEK-LTMLLSFKMNSDNFGKLMPSI-SSDVAIIEYCSI 120

Query: 122 AETILQLTPVLTEVINQGIEEKLFRTPYPKETMEFLLAASQFLLDEGIFMWTPEEMLRKI 181
            +  + + P+L  +I QG  +  +   YP+E+  F+L       D    +    E   K 
Sbjct: 121 KKAAVAM-PILLSLIKQGNSDGSWNCDYPEESALFILRGLSGFSDSTDDLAVKTE---KE 176

Query: 182 QAFIHIMEVTLG 193
           Q  IHI+   LG
Sbjct: 177 QILIHIIFKVLG 188


>NMA0364 [E] COG0665 Glycine/D-amino acid oxidases (deaminating)
          Length = 192

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 97/192 (50%), Gaps = 6/192 (3%)

Query: 2   RISKEPIERRNEILDTAEGLFFTKGYNKTTVNDILQEIGIAKGTFYYYFKSKEEVMDAVV 61
           R++K   ER  EI+DTA+ LF   G++KT ++DI + + +A+G  Y+YFKSK E++ AV+
Sbjct: 3   RVTKTVEERHQEIIDTAKALFMENGFDKTQISDIAKRMNVAQGLVYHYFKSKTEMLYAVI 62

Query: 62  MRFIEXXXXXXXXXXSDPKLTVHDKLLQIIMAQKPDTVRKEKMIEQFHEAENAQIHQKSL 121
               E          +  + T  +K L ++++ K ++    K++     ++ A I   S+
Sbjct: 63  DELAEEKQKEMETVMNRTESTALEK-LTMLLSFKMNSDNFGKLMPSI-SSDVAIIEYCSI 120

Query: 122 AETILQLTPVLTEVINQGIEEKLFRTPYPKETMEFLLAASQFLLDEGIFMWTPEEMLRKI 181
            +  + + P+L  +I QG  +  +   YP+E+  F+L       D    +    E   K 
Sbjct: 121 KKAAVAM-PILLSLIKQGNSDGSWNCDYPEESALFILRGLSGFSDSTDDLAVKTE---KE 176

Query: 182 QAFIHIMEVTLG 193
           Q  IHI+   LG
Sbjct: 177 QILIHIIFKVLG 188


>RSc0012 [K] COG1309 Transcriptional regulator
          Length = 219

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 41/62 (66%)

Query: 2  RISKEPIERRNEILDTAEGLFFTKGYNKTTVNDILQEIGIAKGTFYYYFKSKEEVMDAVV 61
          R  +E +E RN ILD AE +F+ +G  +T+++DI Q  G+ +G  Y++F++K +V  A+ 
Sbjct: 4  RTKEEALETRNRILDAAEEVFYVRGVARTSLSDIAQAAGVTRGAIYWHFRNKADVFAAMC 63

Query: 62 MR 63
           R
Sbjct: 64 ER 65


>CC0772 [K] COG1309 Transcriptional regulator
          Length = 265

 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 34/51 (66%)

Query: 11  RNEILDTAEGLFFTKGYNKTTVNDILQEIGIAKGTFYYYFKSKEEVMDAVV 61
           R  ILD A  +F   GY+  TV DI++  G+A GTFY Y+KSKEEV +A+ 
Sbjct: 81  RQAILDAAREVFGELGYDAATVRDIIRRTGLASGTFYNYYKSKEEVFEALA 131


>DR0074 [K] COG1309 Transcriptional regulator
          Length = 197

 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 2/60 (3%)

Query: 2  RISKEPIERRNEILDTAEGLFFTKGYNKTTVNDILQEIGIAKGTFYYYFKSKEEVMDAVV 61
          R+S +  ERR +ILD A GLF  +G+   TV D+  E+  ++ T Y YF S E ++DA++
Sbjct: 7  RLSAQ--ERRQQILDMAAGLFVERGFESVTVADLAHELQTSRPTIYSYFPSTEAILDALL 64


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.135    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,176,969
Number of extensions: 485470
Number of successful extensions: 1121
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 1121
Number of HSP's successfully gapped: 20
Length of query: 216
Length of database: 38,378,431
Length adjustment: 102
Effective length of query: 114
Effective length of database: 26,614,363
Effective search space: 3034037382
Effective search space used: 3034037382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)