BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0335.0008.p
         (779 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMa1122 [V] COG0577 ABC-type antimicrobial peptide transport sys...    53   2e-06

>SMa1122 [V] COG0577 ABC-type antimicrobial peptide transport system,
           permease component
          Length = 289

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 0/254 (0%), Positives = 0/254 (0%), Gaps = 48/254 (18%)

Query: 533 TAPEAGNEIALSDLNARELNKKVGDILILEAGGKKLDVTVSG-------IYQDITNGGRT 585
                  +  L  +                    +      G       +     N  R 
Sbjct: 128 HKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY-GLNETRP 186

Query: 586 AKARIGYDRKNVLWY----------------IVALDLKPGVSATDKMKQYEQSFSS---- 625
           ++            +                   + L+ G       +            
Sbjct: 187 SQD----KDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242

Query: 626 AKITHLDSYLSQTLGNTIARLKLVTGLAIAVSLAVTIMMTSLFLKMLLAKDTSQIAIMKS 685
                                                                       
Sbjct: 243                                                              302

Query: 686 MGFTHRDICWQYLTKIVSVASIGIVSGTFASGTIGEALVRLLGSMMGASRIELAAQ---- 741
                                                                       
Sbjct: 303 ------------                                                 350

Query: 742 PLLAYLVLPCGYLL 755
                         
Sbjct: 351                364


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.324    0.139    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 53,972,859
Number of extensions: 2320534
Number of successful extensions: 7451
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7469
Number of HSP's successfully gapped: 3
Length of query: 779
Length of database: 38,378,431
Length adjustment: 114
Effective length of query: 665
Effective length of database: 25,230,355
Effective search space: 16778186075
Effective search space used: 16778186075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 120 (50.8 bits)